Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000172-TA|BGIBMGA000172-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
         (285 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53790.1 68416.m05943 telomere-binding protein, putative simi...    28   6.2  
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain...    28   6.2  

>At3g53790.1 68416.m05943 telomere-binding protein, putative similar
           to telomere binding protein TBP1 [Nicotiana glutinosa]
           gi|23664357|gb|AAN39330
          Length = 400

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 209 VAPKWKKPFWRPDLKTRALRRPVKLRDLSTSLVDTMTML 247
           V P   KP W+P++  R +RRP  + ++  +LV  +  L
Sbjct: 296 VVPVRMKPAWQPEMVQRRIRRPFTVSEVE-ALVQAVERL 333


>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 441

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 119 NRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFHDAF 174
           N+ G E H T E     + L+G P++  +  RTA  +T    ++LL++N  F + +
Sbjct: 78  NQSGKEVHRTSER----YGLFG-PEIPGWGFRTALPLTKLQDRELLENNTLFIEVY 128


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,807,711
Number of Sequences: 28952
Number of extensions: 203039
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 2
length of query: 285
length of database: 12,070,560
effective HSP length: 80
effective length of query: 205
effective length of database: 9,754,400
effective search space: 1999652000
effective search space used: 1999652000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)