BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000172-TA|BGIBMGA000172-PA|IPR012337|Polynucleotidyl transferase, Ribonuclease H fold (285 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8UWC9 Cluster: Reverse transcriptase/ribonuclease H/pu... 73 6e-12 UniRef50_O96849 Cluster: Slime mold (D.discoideum) transposon DI... 65 2e-09 UniRef50_UPI0000F1DAE0 Cluster: PREDICTED: similar to reverse tr... 63 9e-09 UniRef50_UPI0000F20F15 Cluster: PREDICTED: similar to reverse tr... 60 6e-08 UniRef50_Q61RJ9 Cluster: Putative uncharacterized protein CBG065... 60 8e-08 UniRef50_UPI0000F209E0 Cluster: PREDICTED: similar to reverse tr... 53 1e-05 UniRef50_Q26106 Cluster: ORF2 protein; n=1; Panagrellus redivivu... 51 4e-05 UniRef50_UPI0000F1E075 Cluster: PREDICTED: similar to reverse tr... 44 0.004 UniRef50_UPI00015B4A40 Cluster: PREDICTED: similar to reverse tr... 40 0.096 UniRef50_UPI00015B52AC Cluster: PREDICTED: similar to tyrosine r... 38 0.22 UniRef50_A7S7J5 Cluster: Predicted protein; n=2; Nematostella ve... 38 0.22 UniRef50_UPI00015B4948 Cluster: PREDICTED: similar to tyrosine r... 38 0.39 UniRef50_A6QZZ1 Cluster: Predicted protein; n=1; Ajellomyces cap... 35 2.1 UniRef50_Q8L753 Cluster: Reverse transcriptase; n=1; Volvox cart... 35 2.7 UniRef50_Q620M3 Cluster: Putative uncharacterized protein CBG027... 35 2.7 UniRef50_A4IBB6 Cluster: Putative uncharacterized protein; n=3; ... 35 2.7 UniRef50_UPI00015B44B6 Cluster: PREDICTED: similar to reverse tr... 33 6.3 UniRef50_UPI00015B4B76 Cluster: PREDICTED: similar to tyrosine r... 33 8.3 UniRef50_Q2UTI4 Cluster: Predicted protein; n=11; Pezizomycotina... 33 8.3 >UniRef50_Q8UWC9 Cluster: Reverse transcriptase/ribonuclease H/putative methyltransferase; n=1; Tetraodon nigroviridis|Rep: Reverse transcriptase/ribonuclease H/putative methyltransferase - Tetraodon nigroviridis (Green puffer) Length = 785 Score = 73.3 bits (172), Expect = 6e-12 Identities = 59/206 (28%), Positives = 82/206 (39%), Gaps = 6/206 (2%) Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSR-NR 120 +DN +VV+YI +GGTRS+Q N AD LSR N Sbjct: 581 TDNSSVVAYINRQGGTRSQQLHELARRLVLWSSSRLLSLRATHVAGVLNRGADLLSRGNP 640 Query: 121 GGSEWHLTEEATTRLFNLWGTPDVDLFASR-TAHVVTNYVTQDLLDSNAYFH-DAFSRSW 178 EW L + +++ +G VDLFAS+ AH + L + +A DA + W Sbjct: 641 LYGEWRLHPQVVAQIWQRYGKAAVDLFASQENAHCPLFF---SLAEGSAPLGVDALAHPW 697 Query: 179 HYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRPVKLRDLST 238 L + FPP SLI L + ILVAP+W W ++ + P L Sbjct: 698 PDVLLYAFPPLSLISPTLARVREQGLSLILVAPRWPSKHWIAEIVQLLMAEPWPLPCRRD 757 Query: 239 SLVDTMTMLPPAHVSNLHLEAWLILG 264 L + L L AW + G Sbjct: 758 LLSQARGEIFHPRPDRLSLWAWPVRG 783 >UniRef50_O96849 Cluster: Slime mold (D.discoideum) transposon DIRS-1, complete, clone SB41; n=5; Dictyostelium discoideum|Rep: Slime mold (D.discoideum) transposon DIRS-1, complete, clone SB41 - Dictyostelium discoideum (Slime mold) Length = 608 Score = 65.3 bits (152), Expect = 2e-09 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 22/181 (12%) Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSR--- 118 +DN T +SYI +GG + + +N +ADHLSR Sbjct: 392 TDNTTTLSYINRQGG-QIQDLSVLFEQLWKQCLKKKVNLIGEHIPGFFNVKADHLSRLSE 450 Query: 119 -NRGGS-------EWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYF 170 N S W L +E R+ +G +DLFAS H TNY T + N Sbjct: 451 MNHKSSTRVIKSYNWQLKKEVFNRIQLQFGQIQMDLFASHLNHQTTNYST---IRMNT-L 506 Query: 171 HDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGR---YILVAPKWKKPFWRPDLKTRAL 227 H +S+ W LA FPPP L+P +L+ +NS+S + IL+ P W+ W P ++ + Sbjct: 507 HLDWSQ-WKQCLA--FPPPILLPSILEKMNSSSSKKVSIILIFPIWRSATWYPMIQAQVP 563 Query: 228 R 228 R Sbjct: 564 R 564 >UniRef50_UPI0000F1DAE0 Cluster: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase; n=5; Danio rerio|Rep: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase - Danio rerio Length = 915 Score = 62.9 bits (146), Expect = 9e-09 Identities = 48/165 (29%), Positives = 66/165 (40%), Gaps = 9/165 (5%) Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRNR- 120 +DN +VVSYI ++GG SR N AD LSR Sbjct: 711 TDNTSVVSYINHQGGLNSRPLCRLANQIHLWAQGRLLSLKAAYIPGPMNVGADLLSRQGL 770 Query: 121 --GGSEWHLTEEATTRLFNLWGTPDVDLFA-SRTAHVVTNYVTQDLLDSNAYFHDAFSRS 177 GG W L + ++ +G DVDLFA +T H + DA ++ Sbjct: 771 EPGG--WRLHPKVLAAIWQRFGRADVDLFACQKTTHCPLWFSQTHPAPLGL---DAMVQT 825 Query: 178 WHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDL 222 W + FPP +L+P VL+ + +LVAP W W DL Sbjct: 826 WPRLRLYAFPPIALLPGVLERVRQGGYNLLLVAPYWPTRVWFSDL 870 >UniRef50_UPI0000F20F15 Cluster: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase; n=4; Danio rerio|Rep: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase - Danio rerio Length = 892 Score = 60.1 bits (139), Expect = 6e-08 Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 11/202 (5%) Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRN-- 119 +D+ +YI GG RSR+ N AD LSR Sbjct: 675 TDSTAAAAYINRMGGMRSRRMSQLARRLLLWSHPRLKSLRAIHVPGTLNRAADALSRQLL 734 Query: 120 RGGSEWHLTEEATTRLFNLWGTPDVDLFAS-RTAHVVTNYVTQDLLDSNAYFHDAFSRSW 178 R G EW L E+ ++ +G +DLFAS AH + L + DA + SW Sbjct: 735 RPG-EWRLHPESVQLIWARFGEAQIDLFASPENAHCQLFFS----LTEGSLGTDALAHSW 789 Query: 179 HYRLA-WLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRP--VKLRD 235 + + FPP SL+ + L + + +LVAP W W +L A P + LR+ Sbjct: 790 PRGMRKYAFPPVSLLTQFLCKVREDEEQVLLVAPLWPNRTWISELSLLATALPWRIPLRE 849 Query: 236 LSTSLVDTMTMLPPAHVSNLHL 257 S P + NLHL Sbjct: 850 DLLSQGQGTIWHPRPDLWNLHL 871 >UniRef50_Q61RJ9 Cluster: Putative uncharacterized protein CBG06557; n=1; Caenorhabditis briggsae|Rep: Putative uncharacterized protein CBG06557 - Caenorhabditis briggsae Length = 994 Score = 59.7 bits (138), Expect = 8e-08 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 110 NTEADHLSRNRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQ--DLLDSN 167 N EAD SRN +W + E + +WG VD FA Y ++ + S Sbjct: 368 NVEADEASRNFDFDDWGIAERVFSHAQRMWGEIKVDWFADANNKKTELYFSRYPEFGTSG 427 Query: 168 AYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWK 214 + R+ L WL PPP LIP+++ + R +LVAP WK Sbjct: 428 VNVFEHVERAERMGLPWLVPPPVLIPQLIKIMRRRRLRGVLVAPLWK 474 >UniRef50_UPI0000F209E0 Cluster: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase; n=1; Danio rerio|Rep: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase - Danio rerio Length = 1047 Score = 52.8 bits (121), Expect = 1e-05 Identities = 53/200 (26%), Positives = 78/200 (39%), Gaps = 9/200 (4%) Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRNR- 120 +D+ +Y+ G TRSR+ N AD LSR + Sbjct: 792 TDSMPAAAYVNRTGDTRSRRMSQLVRRLLLWSHPQQKSLRVFHIPGMLNHAADALSRQQI 851 Query: 121 GGSEWHLTEEATTRLFNLWGTPDVDLFAS-RTAHVVTNYVTQDLLDSNAYFHDAFSRSWH 179 E L E+ ++ +G +DLFAS AH + L + DA + SW Sbjct: 852 HFGERRLHPESVQLIWARFGEAQIDLFASPENAHCQLFFS----LTEGSLGTDALAHSWP 907 Query: 180 YRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRP--VKLRDLS 237 R FPP SL+ ++L + + +LVAP W W +L A P V LR+ Sbjct: 908 -RGTRKFPPVSLLAQLLCKVREDEEQVLLVAPPWPNRTWISELSLLATALPWRVPLREDL 966 Query: 238 TSLVDTMTMLPPAHVSNLHL 257 S P ++ NLH+ Sbjct: 967 LSQGQGTIWHPRPNLWNLHI 986 >UniRef50_Q26106 Cluster: ORF2 protein; n=1; Panagrellus redivivus|Rep: ORF2 protein - Panagrellus redivivus Length = 588 Score = 50.8 bits (116), Expect = 4e-05 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 110 NTEADHLSRNRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAY 169 N+ AD SR +W +++E +L + D FAS + ++++ +A Sbjct: 425 NSAADRASRETDPDDWAISKEIFEKLTAKFQKCQCDRFASHKTKQLDKFMSRVPCPGSAG 484 Query: 170 FHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKW 213 + AF+ W +W PPP+L+ R H+ S + +LV+P W Sbjct: 485 VN-AFAYQWTDWSSWCVPPPALLVRTWKHIESHACEGLLVSPDW 527 >UniRef50_UPI0000F1E075 Cluster: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase; n=1; Danio rerio|Rep: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase - Danio rerio Length = 349 Score = 44.0 bits (99), Expect = 0.004 Identities = 51/203 (25%), Positives = 72/203 (35%), Gaps = 11/203 (5%) Query: 63 DNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRNR-G 121 D+ ++YI G RSR+ N A LSR+ Sbjct: 127 DSMVTMAYINRMVGIRSRRMSQLAHRLLLWSHTRLKSMRAIHIPGKLNCAAHALSRHLVS 186 Query: 122 GSEWHLTEEATTRLFNLWGTPDVDLFAS-RTAHVVTNYVTQDLLDSNAYFHDAFSRSWHY 180 EW L ++ + +G +DLFAS AH Y L D + SW Sbjct: 187 QGEWRLHPDSVQLIRARFGEAQIDLFASTENAHCQLFYS----LTKAPLSMDVLAHSWPS 242 Query: 181 RLA-WLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRPVKLRDLSTS 239 + F P SLI + L + +++ VAP W W +L A P + LS + Sbjct: 243 GMRKCAFLPVSLIAQTLCKVREDEEQFLFVAPLWSNRTWVSELTLFAAAPPWRNSPLSET 302 Query: 240 ---LVDTMTML-PPAHVSNLHLE 258 L T L PP V +E Sbjct: 303 GHHLASTPRSLEPPGMVHRRSVE 325 >UniRef50_UPI00015B4A40 Cluster: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase; n=1; Nasonia vitripennis|Rep: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase - Nasonia vitripennis Length = 585 Score = 39.5 bits (88), Expect = 0.096 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 63 DNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRN-RG 121 DN T ++YI G + N EAD SR Sbjct: 415 DNTTAIAYINRMGSIQFEDLNSLTQQIWQWCEDREIWIFASYIKSRDNFEADSESRKLEP 474 Query: 122 GSEWHLTEEATTRLFNLWGTPDVDLFASRTAH 153 +E+ L+ A + ++G PD+DLFASR+ H Sbjct: 475 ETEYELSNSAFDEIVQVFGAPDIDLFASRSNH 506 >UniRef50_UPI00015B52AC Cluster: PREDICTED: similar to tyrosine recombinase; n=1; Nasonia vitripennis|Rep: PREDICTED: similar to tyrosine recombinase - Nasonia vitripennis Length = 389 Score = 38.3 bits (85), Expect = 0.22 Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 172 DAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLK 223 +AF+ +W+ + + FPP +L+ + L + IL+ P W W P+ K Sbjct: 2 NAFTINWNNKFWYAFPPFALLTKTLKKIRDDKAEGILIVPHWPGQPWFPEFK 53 >UniRef50_A7S7J5 Cluster: Predicted protein; n=2; Nematostella vectensis|Rep: Predicted protein - Nematostella vectensis Length = 360 Score = 38.3 bits (85), Expect = 0.22 Identities = 19/52 (36%), Positives = 25/52 (48%) Query: 165 DSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKP 216 D AY +AF SW + F P +I +VL ++ ILVAP W P Sbjct: 185 DPGAYAVNAFHTSWKNLCFYAFSPFGIIQKVLSKISEDQATGILVAPHWPTP 236 >UniRef50_UPI00015B4948 Cluster: PREDICTED: similar to tyrosine recombinase; n=1; Nasonia vitripennis|Rep: PREDICTED: similar to tyrosine recombinase - Nasonia vitripennis Length = 1054 Score = 37.5 bits (83), Expect = 0.39 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 63 DNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSR-NRG 121 DN T ++YI GG + ++ N AD SR Sbjct: 452 DNITALAYINKMGGIKHKELHALTKVIWEWCIEREIWIFAEYIASKENI-ADEGSRITNV 510 Query: 122 GSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQD 162 +EW L A ++ +G P +DLFASR H Y + D Sbjct: 511 DTEWELANFAFQKIVKEFGYPSIDLFASRVNHKCKRYCSWD 551 >UniRef50_A6QZZ1 Cluster: Predicted protein; n=1; Ajellomyces capsulatus NAm1|Rep: Predicted protein - Ajellomyces capsulatus NAm1 Length = 536 Score = 35.1 bits (77), Expect = 2.1 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 208 LVAPKWKKPFWRPDLKTRALRRPVKLRDLSTSLVDTMTMLPPAHVSNLHLEAWLILGKYE 267 ++AP+ ++P+ P LKTR P +L +L +SL PP +S+ G E Sbjct: 275 IIAPEARRPWPLPRLKTRNADSPARLTELESSL--RAGESPPTEISDSRAATPSETG--E 330 Query: 268 LKSTNFATTPERGNKR 283 L + +T P RG R Sbjct: 331 LSAGPLSTLPSRGRGR 346 >UniRef50_Q8L753 Cluster: Reverse transcriptase; n=1; Volvox carteri f. nagariensis|Rep: Reverse transcriptase - Volvox carteri f. nagariensis Length = 829 Score = 34.7 bits (76), Expect = 2.7 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%) Query: 112 EADHLSRNRGGSEWHLTEEATTRLFN---LWG-TPDVDLFA-SRTAHVVTNYVTQDLLDS 166 +AD LS+ GS+W L +L+ + G +P +D+FA + T V ++ + Sbjct: 658 QADALSKYEDGSQWMLNPTVYAKLWEHPCVHGRSPSLDVFADAHTTKVPGSFFAANWCPG 717 Query: 167 ----NAYFHDAFSRSWHYR--------LAWLFPPPSLIPRVLDHLNSASGRYILVAPKWK 214 +A+ D S W R L ++ PP S + RVL + +L+ P W Sbjct: 718 VKGVDAFAQDWGSPGWGRRDGGETVRPLLYINPPFSAVARVLRKVAEERPDCVLILPVWP 777 Query: 215 KPFWRPDLKTRALRRPVKL 233 + W L+T +R + L Sbjct: 778 RA-WVAILRTLPIRAQMTL 795 >UniRef50_Q620M3 Cluster: Putative uncharacterized protein CBG02733; n=1; Caenorhabditis briggsae|Rep: Putative uncharacterized protein CBG02733 - Caenorhabditis briggsae Length = 1157 Score = 34.7 bits (76), Expect = 2.7 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 201 SASGRYILVAPKWKKPFWRPDLKTRALRRPVKLRDLSTSLVDTMTML---PPAHVSNLHL 257 + SGRY + PK P++ R + RP +R S++++ ++ P H+S LH Sbjct: 935 TVSGRYRKMPPKMHLTVLEPEVP-RVVYRPRPVRSRSSTIISIYSIPIDDEPTHLSELHA 993 Query: 258 EAWLILGKYELKSTNFAT 275 E +I+G E++ T Sbjct: 994 EKRMIVGIDEIEKPENVT 1011 >UniRef50_A4IBB6 Cluster: Putative uncharacterized protein; n=3; Leishmania|Rep: Putative uncharacterized protein - Leishmania infantum Length = 534 Score = 34.7 bits (76), Expect = 2.7 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 14/95 (14%) Query: 120 RGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFHD-AFSRSW 178 RGG HLT +T RL +L+ S HV + +L SN + H+ F W Sbjct: 185 RGGGGGHLTSASTARLPSLY---------SPLEHVSPGSLDLIVLPSNVFAHEMLFDAPW 235 Query: 179 HYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKW 213 H LA P + +L H+ A + AP+W Sbjct: 236 HLSLAHRALRPHGVVAILGHVAEAG----VGAPEW 266 >UniRef50_UPI00015B44B6 Cluster: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase, partial; n=2; Nasonia vitripennis|Rep: PREDICTED: similar to reverse transcriptase/ribonuclease H/putative methyltransferase, partial - Nasonia vitripennis Length = 787 Score = 33.5 bits (73), Expect = 6.3 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 123 SEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFHDAFSRSWHYRL 182 +EW L +A + +G P++DLFA+R+ Y + D A +AF+ SW R+ Sbjct: 576 TEWKLAIKAFNLVEQEFGHPEIDLFATRSNTKCNTYCSWQ-RDPGALAINAFTISWSNRI 634 >UniRef50_UPI00015B4B76 Cluster: PREDICTED: similar to tyrosine recombinase; n=1; Nasonia vitripennis|Rep: PREDICTED: similar to tyrosine recombinase - Nasonia vitripennis Length = 858 Score = 33.1 bits (72), Expect = 8.3 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 113 ADHLSR-NRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFH 171 AD SR G +EW L +A + +G P++ LFA+R+ Y + D A Sbjct: 473 ADKESRITNGDTEWELAIKAFNLVEQEFGHPEIYLFATRSNTKCNTYCSWQ-RDPGALAI 531 Query: 172 DAFSRSWHYR 181 +AF+ SW R Sbjct: 532 NAFTISWSNR 541 >UniRef50_Q2UTI4 Cluster: Predicted protein; n=11; Pezizomycotina|Rep: Predicted protein - Aspergillus oryzae Length = 331 Score = 33.1 bits (72), Expect = 8.3 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Query: 229 RPVKLRDLSTSL----VDTMTMLPPAHVSNLHLEAWLI 262 RP +LRD+ +SL DTM ++PPAH + A LI Sbjct: 61 RPGRLRDMVSSLQEVGADTMCLIPPAHTEKFDITAELI 98 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.319 0.133 0.415 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 276,678,129 Number of Sequences: 1657284 Number of extensions: 9674333 Number of successful extensions: 18810 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 18784 Number of HSP's gapped (non-prelim): 21 length of query: 285 length of database: 575,637,011 effective HSP length: 100 effective length of query: 185 effective length of database: 409,908,611 effective search space: 75833093035 effective search space used: 75833093035 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 72 (33.1 bits)
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