GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000172-TA|BGIBMGA000172-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
         (285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0088 + 13475547-13476705,13477801-13477931                       29   4.3  
12_02_0081 + 13342692-13343514,13343520-13343821                       29   4.3  
12_02_0080 + 13314740-13315892,13316725-13316732                       29   4.3  
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   4.3  
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780...    29   4.3  
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    28   9.9  

>12_02_0088 + 13475547-13476705,13477801-13477931
          Length = 429

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 163 LLDSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKP 216
           L + + +  D   RSW   L  L PPP  +PR++  L  A G      P   +P
Sbjct: 25  LCEIDRHHADGLCRSWRDALLQLRPPPPPLPRLV--LPEADGPAFYCVPSGCRP 76


>12_02_0081 + 13342692-13343514,13343520-13343821
          Length = 374

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 163 LLDSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKP 216
           L + + +  D   RSW   L  L PPP  +PR++  L  A G      P   +P
Sbjct: 25  LCEIDRHHADGLCRSWRDALLQLRPPPPPLPRLV--LPEADGPAFYCVPSGCRP 76


>12_02_0080 + 13314740-13315892,13316725-13316732
          Length = 386

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 163 LLDSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKP 216
           L + + +  D   RSW   L  L PPP  +PR++  L  A G      P   +P
Sbjct: 25  LCEIDRHHADGLCRSWRDALLQLRPPPPPLPRLV--LPEADGPAFYCVPSGCRP 76


>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 192 IPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRPVKLRDLSTSLVDTMTMLPPAH 251
           IP  L   +  +  Y+L  PKW KP+      T+     + LR++    ++T+  LP   
Sbjct: 657 IPCFLRLFHMITDYYLLQLPKWVKPY-----LTKMAYLSINLREIKKEDMETLGDLP--- 708

Query: 252 VSNLHLEAWL 261
            + L LE WL
Sbjct: 709 -ALLSLEIWL 717


>01_06_0157 +
           27075179-27075529,27075849-27076043,27077705-27078036,
           27078157-27078577
          Length = 432

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 160 TQDLLDSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKW 213
           T+ +LD N Y+ + F+  W   L  L   PS   +V   L  A+G  + VA  W
Sbjct: 43  TRFVLDGNPYYANGFNAYW---LMLLAADPSQRGKVSAALGEAAGHGLTVARTW 93


>07_03_1723 -
           29038701-29039213,29039341-29039413,29039504-29039594,
           29039684-29039741,29039829-29039905,29040004-29040214,
           29040339-29040386,29042496-29042608,29043270-29043341,
           29044372-29046336,29046434-29046641,29046847-29047165,
           29047813-29047937,29048024-29048157,29049089-29049164,
           29049276-29049428,29049829-29050532,29050636-29050811,
           29050945-29051107,29051199-29051341,29051802-29051914,
           29053113-29053237,29053867-29054016,29054753-29054921,
           29055201-29055418,29055499-29055709
          Length = 2135

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 48  RDLNKRFDLLSQQLSDNRTVVSYIKNEGGTR 78
           +DL+K+F  ++    +  T++SYI+ +GG R
Sbjct: 716 QDLSKKFYSINDMTKELDTLLSYIEKDGGFR 746


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,388,647
Number of Sequences: 37544
Number of extensions: 263231
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 14,793,348
effective HSP length: 81
effective length of query: 204
effective length of database: 11,752,284
effective search space: 2397465936
effective search space used: 2397465936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)