Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000172-TA|BGIBMGA000172-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(285 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 7e-18
SB_15087| Best HMM Match : RnaseH (HMM E-Value=4.8) 88 7e-18
SB_21171| Best HMM Match : Dam (HMM E-Value=1.3) 81 1e-15
SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49) 73 2e-13
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84) 72 5e-13
SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029) 64 2e-10
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 64 2e-10
SB_15639| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-10
SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033) 62 4e-10
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 61 9e-10
SB_56856| Best HMM Match : Dam (HMM E-Value=1.1) 61 1e-09
SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03) 57 2e-08
SB_54304| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06) 48 1e-05
SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11) 42 4e-04
SB_12248| Best HMM Match : ATP_bind_3 (HMM E-Value=6.4) 41 0.001
SB_10365| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_44273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_19702| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 31 1.1
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 30 1.9
SB_17495| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 30 1.9
SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28) 29 5.8
SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 88.2 bits (209), Expect = 7e-18
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Query: 110 NTEADHLSRN-RGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNA 168
N AD SR +EW L EE +L G PD+D+FASR + + YV+ L D A
Sbjct: 21 NVIADKASRVFEDATEWKLDEEIFVKLTQELGMPDIDMFASRLNYQLKPYVSW-LPDPEA 79
Query: 169 YFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALR 228
+ DAF+ W + + FPP SLIP+VL L S + IL+ P W W P L ++
Sbjct: 80 WAIDAFTLDWEDKFVYAFPPFSLIPQVLQKLESDQAQTILIVPNWSTQPWYPKLSRLLVQ 139
Query: 229 RPVKLRDLSTSL 240
+P+ L + +++
Sbjct: 140 KPILLPEKKSNI 151
>SB_15087| Best HMM Match : RnaseH (HMM E-Value=4.8)
Length = 326
Score = 88.2 bits (209), Expect = 7e-18
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 61 LSDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRN- 119
LSDN+T V+YI+ GGT S N AD SR
Sbjct: 119 LSDNQTAVAYIRAMGGTPSDLCNQMTRETLLWCKQRNLWLKSSHLPGHLNVTADKASREF 178
Query: 120 RGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFHDAFSRSW- 178
+ +EW L A RL WG P VD+ ASR + V +V+ + A+ DAF+ W
Sbjct: 179 KDNTEWSLDISAFNRLVAQWGQPCVDMLASRPNNKVQKHVSWKP-EPTAFAIDAFTIDWA 237
Query: 179 HYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRPVKL 233
Y L + FPP SLI + L + + ++VAP WK FW P L ++ P+ +
Sbjct: 238 QYDLIYCFPPFSLIGKALQKIQACQCTALVVAPLWKTLFWYPKLLKMLMKPPIPI 292
>SB_21171| Best HMM Match : Dam (HMM E-Value=1.3)
Length = 310
Score = 81.0 bits (191), Expect = 1e-15
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 123 SEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFHDAFSRSWHYRL 182
+EW L EE +L PD+D+FASR + + Y + L D A+ DAF+ W +
Sbjct: 40 TEWKLNEEIFVKLTQELEMPDIDMFASRLNYQLKPYESW-LPDPEAWAIDAFTLDWEDKF 98
Query: 183 AWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRPVKLRDLSTSL 240
+ FPP SLIP+VL L S + IL+ P W W P L +++P+ L + +++
Sbjct: 99 VYAFPPFSLIPQVLQKLESDQAQMILIVPNWSTQPWYPKLSRLLVQKPILLPEKKSNV 156
>SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49)
Length = 317
Score = 73.3 bits (172), Expect = 2e-13
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 16/200 (8%)
Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRN-R 120
SDN T V+YI + GG+++ + N +AD SR
Sbjct: 81 SDNTTTVNYIASMGGSQTMECNSIATKIWLFSIEREIWLSAAYIPGKENVQADKESRVFS 140
Query: 121 GGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFHDAFSRSWHY 180
EW + + ++ + G P +DLFAS+ VT Y + D +A + +AFS SW+
Sbjct: 141 DNKEWMIVPQLFKQITDTRGEPTIDLFASKLKKQVTCYASWKP-DPDATYVNAFSISWND 199
Query: 181 RLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDL-------------KTRAL 227
+ + FPP SLI R L + + +L+ P W W L KT L
Sbjct: 200 KFFYAFPPFSLIARCLQKIAMENSEGLLIVPMWPTQPWYSQLLHMLTDVPRMLPRKTDTL 259
Query: 228 RRPVKLRDLSTSLVDTMTML 247
R P + D+ L+ MT++
Sbjct: 260 RMPAR-EDIEHPLIGKMTLM 278
>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
Length = 496
Score = 72.1 bits (169), Expect = 5e-13
Identities = 57/181 (31%), Positives = 72/181 (39%), Gaps = 4/181 (2%)
Query: 63 DNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSR-NRG 121
DN T V I + G + S N EAD+ SR +R
Sbjct: 123 DNSTAVVVINHMGTSHSTALNALSKSIWLWAIERNLWLSAAHLAGKLNIEADYESRTHRS 182
Query: 122 GSEWHLTEEATTRLFNLWGT-PDVDLFASRTAHVVTNYVTQDLLDSNAYFHDAFSRSWHY 180
+EW L + T G P VDLFASR YV+ D A DAFS W
Sbjct: 183 ENEWMLDTDILTNAIEKLGVEPSVDLFASRVNKQFPAYVSYRP-DPGALAIDAFSIQWSD 241
Query: 181 RLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRP-VKLRDLSTS 239
FPP SL+P VL + +LVAP W W P L + L +P ++L+ T
Sbjct: 242 LTFNAFPPFSLMPSVLKKVQEDRAMGVLVAPIWPTQAWYPKLNNKMLAQPAIELKASKTL 301
Query: 240 L 240
L
Sbjct: 302 L 302
>SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)
Length = 318
Score = 63.7 bits (148), Expect = 2e-10
Identities = 52/157 (33%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 110 NTEADHLSRN--RGGSEWHLTEE-ATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDS 166
N EAD SR+ +EW L + L NL P++DLFASR Y + D
Sbjct: 159 NHEADRESRHFHSQDTEWMLNRDNLDMALSNLNFKPEIDLFASRLNKQFDAYCSYRP-DP 217
Query: 167 NAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRA 226
A F +AF+ SW + FPP S I +VL + ++V P W W P L +
Sbjct: 218 EASFINAFTISWSDEKFYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYPILMSLL 277
Query: 227 LRRPVKLRDLSTSLVDTMTMLPPAHVSNLHLEAWLIL 263
R PVKL L T+ P V LH + L++
Sbjct: 278 ARPPVKLPPFKGLL--TLPAFPET-VHPLHKKLTLLI 311
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 63.7 bits (148), Expect = 2e-10
Identities = 52/157 (33%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 110 NTEADHLSRN--RGGSEWHLTEE-ATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDS 166
N EAD SR+ +EW L + L NL P++DLFASR Y + D
Sbjct: 356 NHEADRESRHFHSQDTEWMLNRDNLDMALSNLNFKPEIDLFASRLNKQFDAYCSYRP-DP 414
Query: 167 NAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRA 226
A F +AF+ SW + FPP S I +VL + ++V P W W P L +
Sbjct: 415 EASFINAFTISWSDEKFYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYPILMSLL 474
Query: 227 LRRPVKLRDLSTSLVDTMTMLPPAHVSNLHLEAWLIL 263
R PVKL L T+ P V LH + L++
Sbjct: 475 ARPPVKLPPFKGLL--TLPAFPET-VHPLHKKLTLLI 508
>SB_15639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 63.7 bits (148), Expect = 2e-10
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 112 EADHLSRN-RGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYF 170
EAD SR +EW L + + + P +DLFASR H V YV++ D A
Sbjct: 71 EADTASREFNSRTEWMLRRDFFRDITLRFYVPQIDLFASRLNHQVPLYVSR-YPDPWASA 129
Query: 171 HDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRP 230
DAF +W +++ PP L+PR+L + +LVAP W W P + + P
Sbjct: 130 VDAFRLNWGQWTSFIHPPVILLPRILQKVREDRATTLLVAPDWPGQPWYPQILSMLTGAP 189
Query: 231 VKL 233
+L
Sbjct: 190 YRL 192
>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
Length = 757
Score = 62.5 bits (145), Expect = 4e-10
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 109 YNTEADHLSRNRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNA 168
YN AD LSR +W + + L WG +D FAS T Y ++ +A
Sbjct: 496 YNRRADLLSRFVDKDDWSVNQSVFRVLDAKWGPHTIDRFASAYNTKPTCYNSRFASPGSA 555
Query: 169 YFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALR 228
DAF++ W WL PP SLI + L S G+ L+ P+W + P L + AL+
Sbjct: 556 GV-DAFAQDWTCNNNWLCPPVSLIVPTIRKLQSCKGQGTLIIPEWPSSLFGPFLHSSALK 614
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 61.3 bits (142), Expect = 9e-10
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 110 NTEADHLSRN--RGGSEWHLTEE-ATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDS 166
N EAD SR+ +EW L + L N P++DLFASR Y + D
Sbjct: 356 NHEADRESRHFHSQDTEWMLNRDNLDMALSNRNFKPEIDLFASRLNKQFDAYCSYRP-DP 414
Query: 167 NAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRA 226
A F +AF+ SW + FPP S I +VL + ++V P W W P L +
Sbjct: 415 EASFINAFTISWSDEKFYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYPILMSLL 474
Query: 227 LRRPVKLRDLSTSLVDTMTMLPPAHVSNLHLEAWLIL 263
R PVKL L T+ P V LH + L++
Sbjct: 475 ARPPVKLPPFKGLL--TLPAFPET-VHPLHKKLTLLI 508
>SB_56856| Best HMM Match : Dam (HMM E-Value=1.1)
Length = 322
Score = 60.9 bits (141), Expect = 1e-09
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 110 NTEADHLSRN--RGGSEWHLTEE-ATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDS 166
N EAD SR+ +EW L + L N P++DLFASR Y + D
Sbjct: 163 NHEADRESRHFHSQDTEWMLNRDNLDMALSNRNFKPEIDLFASRLNKQFDAYCSYRP-DP 221
Query: 167 NAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRA 226
A F +AF+ SW + FPP S I +VL + ++V P W W P L +
Sbjct: 222 EASFINAFTISWSDEKFYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYPILMSLL 281
Query: 227 LRRPVKL 233
R PVKL
Sbjct: 282 ARPPVKL 288
>SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)
Length = 327
Score = 56.8 bits (131), Expect = 2e-08
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 110 NTEADHLSRNR-GGSEWHLTEEATT-RLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSN 167
N AD SR + +EW L + + L L +P++DLFASR T YV+ D
Sbjct: 169 NCLADRESRTKIRQTEWMLNIDLVSFALSELEFSPNIDLFASRLNKQFTRYVSFKP-DPG 227
Query: 168 AYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRAL 227
A D F+ + + FPP S+I L + I V P W W P +KT L
Sbjct: 228 ALAVDTFTLTLSSLKFYAFPPFSVISTFLPKVQQDHATGICVVPDWPTQAWYPKVKTMCL 287
Query: 228 RRPVKL 233
++P+ L
Sbjct: 288 KQPITL 293
>SB_54304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 48.4 bits (110), Expect = 7e-06
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 110 NTEADHLSRNRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAY 169
N AD +SR +W + + + L+G ++D FAS + ++
Sbjct: 395 NEYADSISRIVDYDDWAIPQAFFFHVSKLFGPFEIDRFASSLTNKCARLYSKFWCPGWEG 454
Query: 170 FHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKW-KKPFW 218
DAFS SW +L PP L+ R + HL + +++ PKW FW
Sbjct: 455 V-DAFSTSWEGVNNYLVPPVYLVSRAISHLEVSGATGVIIVPKWTSASFW 503
>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
Length = 509
Score = 47.6 bits (108), Expect = 1e-05
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 165 DSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKT 224
D A F +AF+ SW + FPP S I +VL + ++V P W W P L +
Sbjct: 407 DPEASFINAFTISWSDEKFYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYPILMS 466
Query: 225 RALRRPVKLRDLSTSLVDTMTMLPPAHVSNLHLEAWLIL 263
R PVKL L T+ P V LH + L++
Sbjct: 467 LLARPPVKLPPFKGLL--TLPAFPET-VHPLHKKLTLLI 502
>SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)
Length = 541
Score = 42.3 bits (95), Expect = 4e-04
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 110 NTEADHLSRNR-GGSEWHL-TEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSN 167
N AD SR + +EW L T+ + L L TP++DLFASR + L S
Sbjct: 187 NCLADRESRTKIRQTEWMLNTDLVSFALSELEFTPNIDLFASRLNKQFHSLCVVQTLSSL 246
Query: 168 AYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRAL 227
++ FPP S I L + I V P W W P +KT L
Sbjct: 247 KFY--------------AFPPFSGIGTFLQKVQQDHATEICVVPDWPTQAWYPKVKTMCL 292
Query: 228 RRPVKL 233
+P+ L
Sbjct: 293 NQPITL 298
>SB_12248| Best HMM Match : ATP_bind_3 (HMM E-Value=6.4)
Length = 172
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 110 NTEADHLSRNRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAY 169
N AD +SR +W +++ + + L+G ++D FAS + + ++
Sbjct: 80 NEYADSISRIVDYDDWAISQTFFSHVSKLFGPFEIDRFASSLTNKCARFYSK-FWCPGCE 138
Query: 170 FHDAFSRSWHYRLAWLFPPPSLIPRVLDHL 199
DAFS SW +L PP L+ R + HL
Sbjct: 139 GVDAFSTSWEGVNNYLVPPVYLVSRAISHL 168
>SB_10365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 110 NTEADHLSRNRGGSEWHLTEEATTRLFNL-WGTPDVDLFASRTAHVVTNYVTQDLLDSNA 168
N AD LSR +W + A RL N+ WG +D FA+ ++ + ++ +
Sbjct: 230 NDTADQLSRFIDYDDW--SNPAVFRLLNIKWGPYTIDRFATHYNAQLSRFHSKFAAPGSC 287
Query: 169 YFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASG 204
DAF++ W W+ PP +I + + L+S+ G
Sbjct: 288 GV-DAFTQEWSGENNWICPPVHVIVQSIRALSSSQG 322
>SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 159 VTQDLLDSNAYFHD--AFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILVAPKWKKP 216
VT D++ +Y+ A + H WL PP L+PR ++H S + ++V
Sbjct: 305 VTYDVIGQPSYYRGPVANHENRHADDNWLPPPSILVPRAINHFRLCSAKILIVPFGKPAA 364
Query: 217 FW 218
FW
Sbjct: 365 FW 366
>SB_44273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 184 WLFPPPSLIPRVLDHLNSASGRYILVAP-KWKKPFWRPDLKTRALRRPVKLRDLS 237
++FPP +LI L R +V P K+ +P+W P ++ A R ++L LS
Sbjct: 137 YVFPPFNLIGATFKFLREQKARCTVVIPDKYPRPYWWPLIQAHA-RSKLRLATLS 190
>SB_19702| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 451
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 190 SLIPRVLDHLNSASGRYILVAPKWKKPFWRPDLKTRALRRPVKLR 234
SLI +VL + I+V P W FW P L PV+++
Sbjct: 305 SLIGKVLQFKEESGTTAIIVIPHWPTQFWYPSLLQLLKAPPVQIK 349
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 110 NTEADHLSRNR-GGSEWHL-TEEATTRLFNLWGTPDVDLFASRTAHVVTNYVT 160
N AD SR + +EW L T+ + L L +P +DLFASR T YV+
Sbjct: 170 NCLADRESRTKIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVS 222
>SB_17495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 109 YNTEADHLSRNRGGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNY 158
YN AD LSR +W + + L WG +D FAS +T Y
Sbjct: 502 YNQRADLLSRFVDKDDWSVNQSVIRVLDAKWGPHTIDRFASAYNTKLTCY 551
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 110 NTEADHLSRNR-GGSEWHL-TEEATTRLFNLWGTPDVDLFASRTAHVVTNYVT 160
N AD SR + +EW L T+ + L L +P +DLFASR T YV+
Sbjct: 330 NCLADRESRTKIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVS 382
>SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)
Length = 675
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSRN-R 120
+DN T V YI + GGT S+ NT AD LSR
Sbjct: 480 ADNTTAVHYITSMGGTHSKLCNKITREIWLWCKARNIWLTATHIPEIQNTTADRLSRKFP 539
Query: 121 GGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSN 167
+EW L + + ++ T+ T V+Q+++D N
Sbjct: 540 DRTEWQLDPQHVDQDATKTSRGPRTSTSNCTSMENTGLVSQNVMDVN 586
>SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 62 SDNRTVVSYIKNEGGTRSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXYNTEADHLSR-NR 120
SDN + V+YI + GG++S + N +AD SR
Sbjct: 51 SDNTSTVNYIASMGGSQSMECNSIATKIWLFCIEREIWLSAAYIPGKENVQADKESRVFS 110
Query: 121 GGSEWHLTEEATTRLFNLWGTPDVDLFASRTAHVVTN 157
EW + + ++ + W D +L + V N
Sbjct: 111 DNKEWMIAPQLFKQITDTWENSDGELRGAADRSNVAN 147
>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 900
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 109 YNTEADHLSRNRGGSEWHLTEEATTRLFNLWGTPDVDLFAS 149
YN AD LSR +W + + + WG +D FAS
Sbjct: 589 YNQRADVLSRFVEKDDWSVNQSVFRLVDAKWGPHTIDRFAS 629
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.133 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,199,910
Number of Sequences: 59808
Number of extensions: 290039
Number of successful extensions: 484
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 28
length of query: 285
length of database: 16,821,457
effective HSP length: 81
effective length of query: 204
effective length of database: 11,977,009
effective search space: 2443309836
effective search space used: 2443309836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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