Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000171-TA|BGIBMGA000171-PA|undefined
         (97 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31889| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   1.8  
SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             26   5.4  
SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_20598| Best HMM Match : Herpes_UL49_2 (HMM E-Value=6.4)             25   7.2  
SB_35365| Best HMM Match : Toxin_24 (HMM E-Value=1.9)                  25   7.2  
SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)                     25   7.2  
SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66)                   25   9.5  
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)                25   9.5  
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_5337| Best HMM Match : ResIII (HMM E-Value=2.4)                     25   9.5  

>SB_31889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 27 ATSRPPWLAPGSQIFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCSKDLKA 80
          A  R  W+ PG   F++S  C T       C +       +  +  CCS D+KA
Sbjct: 48 AARRLSWVTPG---FSQSRRCKTTASAKLACLQVDSRGSPRSTHIMCCSVDMKA 98


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 5   FVLWRNLMFLMALFLCIALVRTATSRPPWLAPGSQ 39
           ++ W N     A F     +  A  RPPW APG+Q
Sbjct: 523 YLPWNNHHLYRAAFAPSKFLHAA--RPPWFAPGTQ 555


>SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 25  RTATSRPPWLAPGSQIFT-ESAECHTDDELLDLCQRCAKL 63
           RT  +RP   + GS   T E  + H +DE + +C  C +L
Sbjct: 68  RTDANRPSPCSSGSTTPTGEVQDYHRNDEQVAICMECYRL 107


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1    MALQFVLWRNLMFLMALFLCIALVRTATSRPPWLAP-GSQIFTESAE 46
            M  +   W   + +   +LCI LV    SR  W+ P  S +F  +A+
Sbjct: 2547 MKQEMFAWVKEVVIFVGYLCILLVVAHGSRSQWMHPIKSSLFQTTAD 2593


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 40   IFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCSKDLKARKWC 84
            IFTE  +    D+ +D CQ       + +   +C S    +RK C
Sbjct: 1848 IFTEQGKVKDMDQCVDYCQNRTNCHVAFMVERSCYSIQCYSRKTC 1892


>SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 481

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 24  VRTATSRPPWLAPGSQIFTESAECHTDDELLDLCQR 59
           V T +   P  + G Q F  S E H  D +L LC R
Sbjct: 134 VATLSGFRPEDSQGKQSFQASVELHLSDLVLRLCPR 169


>SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 51  DELLDLCQRCAKLTKSKLAYPACCSKDLK 79
           DELL  C++    T+ +L Y    SKD K
Sbjct: 83  DELLSSCEQEKTATEKRLGYRRIMSKDEK 111


>SB_20598| Best HMM Match : Herpes_UL49_2 (HMM E-Value=6.4)
          Length = 292

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 25  RTATSR-PPWLAPGSQIFTESAECHTDDELLDLCQRC 60
           +T+TS  PPW  P       S + +T ++ L  C+RC
Sbjct: 159 KTSTSDLPPWKGPDPHPVDISRKSNTKNQPLIGCRRC 195


>SB_35365| Best HMM Match : Toxin_24 (HMM E-Value=1.9)
          Length = 196

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 33 WLAPGSQIFTESAECHTDDELLDLCQR----CAKLTKSKLAYPACC 74
          W    S+  T S     D  L   C +    C K   S++ YP CC
Sbjct: 49 WKKDESKKITRSQTTPYDKALCFFCDQRFTTCCKHKGSRVVYPVCC 94


>SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)
          Length = 317

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 53 LLDLCQRCAKLTKSKLAYPACCSKDLKARKWCSDYVYFG 91
          ++ LC++CA    +  A   CC    +AR      V FG
Sbjct: 7  IMSLCRQCASGLSASNAGFCCCHHSRRARHEIGVQVLFG 45


>SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66)
          Length = 822

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 50  DDELLDLCQRCAKLTKSKLAYPACCSKDLKARKWC 84
           D +   LC+ C K   +    P+    D+K R WC
Sbjct: 658 DSDYRCLCEDCGKPYSTCDGLPSSRLHDIKDRVWC 692


>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
          Length = 657

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 32  PWLAPGSQIFTESAECHTDDELLDLCQRCAKLTKSKLAYP 71
           PW+ PG ++  ES      D+L   C RC        A P
Sbjct: 589 PWMCPGCRLIVESF-----DQLQIHCARCGPANGEGAAQP 623


>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 66  SKLAYP-ACCSKDLKARKWCSDYVY 89
           S+  +P AC S+ L  R WC+++ Y
Sbjct: 860 SRALFPTACMSRALFLRAWCAEHRY 884


>SB_5337| Best HMM Match : ResIII (HMM E-Value=2.4)
          Length = 392

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 56  LCQRCAKLTKSKLAYPACCSKDLKARKWC-SDY 87
           LC+ C K   +  + P+    D+K R WC SD+
Sbjct: 148 LCEDCGKPYSTCDSLPSSRLHDIKDRIWCRSDF 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.330    0.138    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,587
Number of Sequences: 59808
Number of extensions: 105378
Number of successful extensions: 370
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 15
length of query: 97
length of database: 16,821,457
effective HSP length: 71
effective length of query: 26
effective length of database: 12,575,089
effective search space: 326952314
effective search space used: 326952314
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)