GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000171-TA|BGIBMGA000171-PA|undefined
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    31   0.032
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   0.90 
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   1.6  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   2.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   3.6  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    24   4.8  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    24   4.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    23   6.4  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    23   6.4  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 31.1 bits (67), Expect = 0.032
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 36  PGSQIFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCS 75
           P  QI     +   DD LLD   R A LT++ L YP+  S
Sbjct: 612 PEVQIAVAEGKISEDDNLLDFILRDASLTRNPLVYPSAKS 651


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 37  GSQIFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCSKDLKA 80
           G  ++TE AE  + +E    C  C+K   S    P+CCS++ K+
Sbjct: 206 GKSLWTEHAELKSVNEGSS-C--CSKKDSSPSEKPSCCSQEKKS 246


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 40  IFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCSKDLKARKWC 84
           + T S   H++ +LLD C  C K  K K      C + LK    C
Sbjct: 100 VCTRSISRHSNQKLLDFCVECKK-HKIKCVGNFPCGRCLKKGLEC 143


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 59  RCAKLTKSKLAYPACCSKDLKARKWCSDYVYFGRGQYD 96
           +  +L K+++  P        ++K  S   YFGRG +D
Sbjct: 364 KARELKKNEVNAPTYARDHFASQKSISSDQYFGRGSFD 401


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 64   TKSKLAYPACCSKDLKARKW 83
            T S  A P CCSK+ K   W
Sbjct: 1493 TLSNYACPDCCSKEGKLYPW 1512


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 47  CHTDDELLDLCQRCAKLTKSKLAY 70
           CHT D L ++C     L   KL Y
Sbjct: 476 CHTQDTLNEVCTDIIHLYHQKLDY 499


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 6   VLWRNLMFL----MALFLCIALVRTATSRP 31
           + W++LM L    M   LC++L++ A  RP
Sbjct: 88  LFWKSLMGLLYSTMVCGLCVSLLKNAVGRP 117


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 40   IFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCSKDLKARKWCSDYV 88
            +FT+ +   TDDEL++L      ++K+   Y +  S  +   +  +D++
Sbjct: 1015 LFTKGSNL-TDDELIELISENRSMSKALSEYGSQKSTSITTARRLADFL 1062


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 23  LVRTATSRPPWLAPGS---QIFTESAEC---HTDDELLDLCQRCAKLTKSKLAYPACCSK 76
           L+  A S P W+   +   +++  + E      +DE L    RC  LT+ +  +      
Sbjct: 121 LIEAALSLPKWIDEDNSDYRVWIHNGEVIILRPEDEFLKKMNRCPPLTREQAIFQISSGS 180

Query: 77  DLKARKWCSDYV 88
           +L   +  +D +
Sbjct: 181 NLYTSREVNDSI 192


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.330    0.138    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,214
Number of Sequences: 5004
Number of extensions: 12938
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 9
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 47 (23.0 bits)