Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000171-TA|BGIBMGA000171-PA|undefined
(97 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0388 + 28927211-28928467 29 0.44
07_03_1340 + 25887135-25887372,25887676-25887798,25888388-258885... 28 1.0
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648... 28 1.4
04_01_0151 - 1751828-1751911,1754565-1755578 27 2.4
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411... 27 3.1
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278... 26 4.1
01_06_0385 + 28914888-28916342 26 4.1
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767... 26 5.5
07_03_0383 - 17476271-17479228,17480466-17480750 25 7.2
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 25 7.2
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684... 25 9.5
01_06_0723 + 31501900-31502808,31502846-31503295 25 9.5
>01_06_0388 + 28927211-28928467
Length = 418
Score = 29.5 bits (63), Expect = 0.44
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 8 WRNLMFLMALFLCIA--LVRTATSRPPWLAPGSQIFTESAECHTDDELLDLCQRCAKLTK 65
W + L FL A V+T + P W++P S + E TDDE D+ A+ K
Sbjct: 247 WTSSQLLEHPFLASAGCSVKTGEAAPQWVSPKSTLDVAFWESDTDDEEDDMPASPAERIK 306
Query: 66 SKLAYPACCSKD 77
+ LA P D
Sbjct: 307 A-LACPCSALPD 317
>07_03_1340 +
25887135-25887372,25887676-25887798,25888388-25888527,
25888680-25888817,25888898-25889119
Length = 286
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 30 RPPWLAPGSQIFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCSKDLKARKWC 84
R PW AP + +F E A E + R A K Y K + A WC
Sbjct: 37 RVPWRAPSAFVFDEVARA-AGGERRRVSTRAASWDSEKSPYETLAVKLMGASFWC 90
>02_02_0586 -
11861509-11861637,11863651-11863815,11864738-11864846,
11864971-11865065,11865169-11865702,11866299-11866499,
11867826-11868090,11868111-11868736
Length = 707
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 21 IALVRTATSRPPWLAPGSQIFTESAECHTDDELLDLCQRCAKLTKSK 67
IA RT T+ PPW A + + T E +D C C+ + K++
Sbjct: 170 IAKARTCTAMPPWPASLATLITAKTESLMAAAAMDGCW-CSNVYKAR 215
>04_01_0151 - 1751828-1751911,1754565-1755578
Length = 365
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 6 VLWRNLMFLMALFLCIALVRTATSR 30
+L L+ ++ LFLC+A+ R TSR
Sbjct: 2 MLLLTLLLVLTLFLCLAVFRRTTSR 26
>01_06_0352 +
28638453-28639391,28639486-28640034,28640388-28641195,
28641279-28641389,28641556-28641683
Length = 844
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 34 LAPGSQIFTESAECHTDDELLDLCQRCAKLTKSKLA 69
+A ++F E + +DDE++ +C++ + ++ +A
Sbjct: 507 MAEEEEVFDEGSTSSSDDEIISMCRKNMNMAQTMVA 542
>06_01_0389 +
2779790-2779891,2780378-2781912,2782087-2782135,
2782620-2782683,2782755-2782843
Length = 612
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 45 AECHTDDELLDLCQRCAKLTKSKLAYP 71
++C DD LL L C +LT +L+ P
Sbjct: 111 SDCVGDDALLSLATSCPRLTVLRLSEP 137
>01_06_0385 + 28914888-28916342
Length = 484
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 24 VRTATSRPPWLAPGSQIFTESAECHTDDE 52
V+ A +P W++P S + E TDDE
Sbjct: 264 VKAAQPKPRWVSPKSTLDAAFWESETDDE 292
>05_03_0362 -
12973488-12974251,12975346-12975580,12976410-12976738,
12977277-12977404,12977695-12977879,12977972-12978165,
12978239-12978368,12978507-12978566,12979037-12979059,
12979158-12979218,12979677-12979748,12979804-12979924,
12980351-12980415,12980973-12981089,12981970-12982239
Length = 917
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 14 LMALFLCIALVRTATSRPPWLAPGSQIFTESAECHTDDELLDLCQRCAKLTKSKLAYPAC 73
L +L +A ++ +RPP+LA G ++F + +L + C A L L +P
Sbjct: 634 LASLKALLASFLSSHARPPYLAQGIELF-RRGKLEIGTKLAEFCSH-ALLALDVLTHPRA 691
Query: 74 CSKDLKA 80
S + A
Sbjct: 692 LSLESAA 698
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 25 RTATSRPPWLAPGSQIFTESAECHTDDELLDLC 57
R +T P WL P + + +ELLD C
Sbjct: 933 RNSTELPQWLQPQQPFVLKRLDIIGTEELLDKC 965
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 33 WLAPGSQIFTESAECHTD 50
W PG +F CHTD
Sbjct: 803 WTVPGGGLFPNLRRCHTD 820
>07_03_0276 +
16166528-16166796,16166824-16167291,16168048-16168414,
16168565-16168587,16170094-16170385
Length = 472
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 61 AKLTKSKLAYPACCSKDLKARKWCS 85
A TK KL A S L+ R+WCS
Sbjct: 402 AHYTKCKLPRRARSSCSLRRRRWCS 426
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 21 IALVRTATSRPPWLAPGSQIFTESAECHTDDELLDLCQRCAKLTKSKLAYPACCSKD 77
+ L+ + SRP G + +E H +D L+LC C +T P KD
Sbjct: 159 LGLLDLSLSRPVASRNGRLVLELQSEEHVNDGKLNLCV-CNPMTGDVAVLPPLSGKD 214
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.330 0.138 0.474
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,651
Number of Sequences: 37544
Number of extensions: 91445
Number of successful extensions: 291
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 12
length of query: 97
length of database: 14,793,348
effective HSP length: 70
effective length of query: 27
effective length of database: 12,165,268
effective search space: 328462236
effective search space used: 328462236
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)
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