GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000171-TA|BGIBMGA000171-PA|undefined
         (97 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27312-6|AAA68250.1|  512|Caenorhabditis elegans Hypothetical pr...    30   0.29 
AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical...    26   3.6  
AL031630-15|CAA20994.1|  244|Caenorhabditis elegans Hypothetical...    26   3.6  
U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical pr...    26   4.8  
U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    25   6.3  
AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical ...    25   6.3  
AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical ...    25   6.3  
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    25   8.3  
AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical ...    25   8.3  

>U27312-6|AAA68250.1|  512|Caenorhabditis elegans Hypothetical
           protein F26A1.3 protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 28  TSRPPWLAPGSQIFTESAECHTDDELL 54
           + RP  +AP SQ+ TE  ECH  DELL
Sbjct: 99  SERPDLVAPDSQLTTE--ECHNLDELL 123


>AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical
          protein Y66D12A.15 protein.
          Length = 789

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 28 TSRPPWLAPGSQIFTES 44
          T+RP W+AP   IF ES
Sbjct: 72 TARPLWVAPDGHIFLES 88


>AL031630-15|CAA20994.1|  244|Caenorhabditis elegans Hypothetical
          protein Y38H6C.16 protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 8  WRNLMFLMALFLCIALVRTATSRPPWLAP 36
          W+ L F + LFL I  + ++  RPP L P
Sbjct: 35 WKILFFGIFLFLTIIKLASSMPRPPVLPP 63


>U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical
           protein C30B5.1 protein.
          Length = 706

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 46  ECHTDDELLDLCQRCAKLTKSKLAYPA 72
           ECH  +E+++LC R  +       YPA
Sbjct: 127 ECHLCNEMMNLCLRRTRYRGQAREYPA 153


>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
          receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 5  FVLWRNLMFLMALFLCIALVRTATSR 30
          +V++ +L+ ++ALFL I  +R  TS+
Sbjct: 31 YVIYIDLVLILALFLSIHAIRELTSK 56


>AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4a protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 9   RNLMFLMALFLCIALVRTATSRPPWLAPGSQIFTESAECH 48
           RN+  L  +F  + LV TA    PW A        S  CH
Sbjct: 90  RNVFLLNLIFTDLILVFTAIPVTPWYAMTKDWAFGSVMCH 129


>AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4b protein.
          Length = 433

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 9   RNLMFLMALFLCIALVRTATSRPPWLAPGSQIFTESAECH 48
           RN+  L  +F  + LV TA    PW A        S  CH
Sbjct: 90  RNVFLLNLIFTDLILVFTAIPVTPWYAMTKDWAFGSVMCH 129


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 26  TATSRPPWLAPGSQIFTESAEC 47
           T+ S+ P LAP SQ+F E + C
Sbjct: 386 TSVSKLP-LAPSSQLFNEESRC 406


>AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.5 protein.
          Length = 183

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 45  AECHTDDELLDLC-QRCAKLTKSKLAY 70
           ++CH D + LD C +    LT+ KL Y
Sbjct: 102 SKCHDDQKELDACVEANLNLTRPKLGY 128


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.330    0.138    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,895
Number of Sequences: 27539
Number of extensions: 79773
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 9
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)