GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000171-TA|BGIBMGA000171-PA|undefined
         (97 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32590.1 68415.m03979 barren family protein low similarity to...    29   0.48 
At1g73165.1 68414.m08464 Clavata3 / ESR-Related-1 (CLE1) Clavata...    29   0.48 
At1g56690.1 68414.m06520 pentatricopeptide (PPR) repeat-containi...    28   1.1  
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa...    26   3.4  
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa...    26   3.4  
At5g43660.1 68418.m05336 expressed protein similar to unknown pr...    26   4.5  
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p...    26   4.5  
At2g20250.1 68415.m02366 hypothetical protein                          26   4.5  
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    25   6.0  
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat...    25   6.0  
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i...    25   6.0  
At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containi...    25   7.9  

>At2g32590.1 68415.m03979 barren family protein low similarity to
          SP|Q9Y7R3 Condensin complex subunit 2 (p105)
          {Schizosaccharomyces pombe}; contains Pfam profile
          PF05786: Barren protein
          Length = 704

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 35 APGSQIFTESAECHTDDELLDLCQRCAKL 63
          A GSQ  TES  C    ++L+L Q C KL
Sbjct: 57 ARGSQPETESDPCFDKQQILELFQNCIKL 85


>At1g73165.1 68414.m08464 Clavata3 / ESR-Related-1 (CLE1)
          Clavata3/ESR-Related-1 (CLE1)
          Length = 74

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)

Query: 10 NLMFLMALFL-CIALVRTATSRP 31
          NL FL+ LFL C++L R++ SRP
Sbjct: 3  NLKFLLCLFLICVSLSRSSASRP 25


>At1g56690.1 68414.m06520 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 704

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 37  GSQIFTESAECHTDDE------LLDLCQRCAKLTKSKLAYPACCSKDL 78
           G Q+      C  DD+      L+ +  +C +L K+KL +    SKD+
Sbjct: 350 GRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDI 397


>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
          family protein low similarity to SP|P79263
          Inter-alpha-trypsin inhibitor heavy chain H4 precursor
          {Sus scrofa}; contains Pfam profiles PF00097: Zinc
          finger, C3HC4 type (RING finger), PF00092: von
          Willebrand factor type A domain
          Length = 676

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 8  WRNLMFLMALFLCIALVRTATSRPPWLAPGS 38
          W+ +   ++L LC  L RT    PP LA  S
Sbjct: 5  WKKMKLALSLNLCNYLPRTLEEEPPSLALNS 35


>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
          family protein low similarity to SP|P79263
          Inter-alpha-trypsin inhibitor heavy chain H4 precursor
          {Sus scrofa}; contains Pfam profiles PF00097: Zinc
          finger, C3HC4 type (RING finger), PF00092: von
          Willebrand factor type A domain
          Length = 675

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 8  WRNLMFLMALFLCIALVRTATSRPPWLAPGS 38
          W+ +   ++L LC  L RT    PP LA  S
Sbjct: 5  WKKMKLALSLNLCNYLPRTLEEEPPSLALNS 35


>At5g43660.1 68418.m05336 expressed protein similar to unknown
           protein (gb|AAB72163.1)
          Length = 361

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 50  DDELLDLCQRCAKLTKSKLAYPACCSKDLKARK 82
           D+E  D C +CA+  K K +      + +K RK
Sbjct: 316 DNEFRDWCGQCAREKKEKKSQSLASKRKVKKRK 348


>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
          putative / heterogeneous nuclear ribonucleoprotein,
          putative similar to Polypyrimidine tract-binding
          protein 1 (PTB) (Heterogeneous nuclear
          ribonucleoprotein I) (hnRNP I) from {Sus scrofa}
          SP|Q29099, {Mus musculus} SP|P17225; contains InterPro
          entry IPR000504: RNA-binding region RNP-1 (RNA
          recognition motif) (RRM)
          Length = 399

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 46 ECHTDDELLDLCQRCAKLTKSK 67
          EC  ++EL+DLC+R  K+  +K
Sbjct: 27 EC-VEEELIDLCKRFGKIVNTK 47


>At2g20250.1 68415.m02366 hypothetical protein
          Length = 559

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 68  LAYPACCSKDLKARKWCSDY 87
           + YP   S  L    WCSDY
Sbjct: 399 ITYPNASSSSLTDNPWCSDY 418


>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 45  AECHTDDELLDLCQRCAKLTKSKLAYPACCSKDLK 79
           A  HT   L+D C R  ++ K+  AY    SK++K
Sbjct: 535 ANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVK 569


>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
           similar to to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 853

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 72  ACCSKDLKARKWCSDYVY 89
           ACC++D K+++ C   VY
Sbjct: 170 ACCTRDFKSKQNCKPTVY 187


>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
           identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
           thaliana]; Monovalent cation:proton antiporter family 2
           (CPA2 family) member, PMID:11500563
          Length = 618

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 17  LFLCIALVRTATSRPPWLAPGSQIFTESAECHTDDELL 54
           LFL + +    T   PWLA G Q+     E H    LL
Sbjct: 376 LFLVVGISMAIT---PWLAAGGQLIASRFELHDVRSLL 410


>At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 705

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 37  GSQIFTESAECHTDDE------LLDLCQRCAKLTKSKLAYPACCSKDL 78
           G Q+  +   C  D +      L+ +  +C +L KSKL +    SKD+
Sbjct: 350 GKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDI 397


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.330    0.138    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,801
Number of Sequences: 28952
Number of extensions: 71178
Number of successful extensions: 258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 12
length of query: 97
length of database: 12,070,560
effective HSP length: 70
effective length of query: 27
effective length of database: 10,043,920
effective search space: 271185840
effective search space used: 271185840
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)