Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000170-TA|BGIBMGA000170-PA|IPR011709|Protein of unknown
function DUF1605
         (160 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 18 DKRKSERACKQWCQRYR 34
          D+   ER C+ W  ++R
Sbjct: 35 DEALKERQCQNWFDKFR 51


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 1   MYLNIFDSYLRVRSSCEDKRKSERAC 26
           M +++ DS  ++   C D  K+E  C
Sbjct: 86  MDMDLKDSIRKIIRQCVDNAKNEDKC 111


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,659
Number of Sequences: 429
Number of extensions: 2228
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 160
length of database: 140,377
effective HSP length: 53
effective length of query: 107
effective length of database: 117,640
effective search space: 12587480
effective search space used: 12587480
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)