Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000170-TA|BGIBMGA000170-PA|IPR011709|Protein of unknown
function DUF1605
(160 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 89 1e-18
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 78 3e-15
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 72 2e-13
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 71 5e-13
At5g14900.1 68418.m01748 helicase associated (HA2) domain-contai... 67 5e-12
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 64 3e-11
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 61 3e-10
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 61 4e-10
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 60 9e-10
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 54 5e-08
At2g14800.1 68415.m01677 hypothetical protein 28 2.6
At1g72250.1 68414.m08353 kinesin motor protein-related 28 3.4
At5g40450.1 68418.m04905 expressed protein 27 4.5
At5g19400.1 68418.m02312 expressed protein 27 6.0
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 89.0 bits (211), Expect = 1e-18
Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 12/134 (8%)
Query: 28 QWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMKCVLSGYF 87
QWC + LN++ ++K +IRD L++I + + I K +G D+ E V K V +G+F
Sbjct: 572 QWCYKNFLNYQSMKKVVEIRDQLKRIAR-RLGITLKSCDG-DM-----EAVRKAVTAGFF 624
Query: 88 PQAARLTPA--GAYRGLRGAD-LALSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPI 144
A RL P G Y+ +RG++ + + P S L+ P +WV + S+ S +R YMR+V+ I
Sbjct: 625 ANACRLEPHSNGVYKTIRGSEEVYIHPSSVLFRVNP-KWVVYQSI-VSTERQYMRNVVTI 682
Query: 145 DRSWLLELAPHYYK 158
+ SWL E+APH+Y+
Sbjct: 683 NPSWLTEVAPHFYQ 696
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 77.8 bits (183), Expect = 3e-15
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 21 KSERACKQWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMK 80
K E QWC + + +++A DIRD L ++ K +E + P+ + + K
Sbjct: 710 KEENYSTQWCCEKFIQSKSMKRARDIRDQLLGLLN-KIGVE--LTSNPN----DLDAIKK 762
Query: 81 CVLSGYFPQAARLTPAGAYRGLRGADLA-LSPDSCLYAAPPPQWVTFASVQCSRDRTYMR 139
+L+G+FP +A+L G+YR ++ + P+S L+ A P +W+ + + + + YMR
Sbjct: 763 AILAGFFPHSAKLQKNGSYRRVKEPQTVYVHPNSGLFGASPSKWLVYHELVLTT-KEYMR 821
Query: 140 DVMPIDRSWLLELAPHYYK 158
+ WL+E+APHYYK
Sbjct: 822 HTTEMKPEWLIEIAPHYYK 840
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 71.7 bits (168), Expect = 2e-13
Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 28 QWCQRYRLNHRVLEKAADIRDSLEKIVKG-KFNIENKVFEGPDLGTAKCERVMKCVLSGY 86
QWC + R +++A DIRD LE +++ + +I + + E + V K +++G+
Sbjct: 901 QWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISSNLNE--------LDSVRKSIVAGF 952
Query: 87 FPQAARLTPAGAYRGLRGADLA-LSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPID 145
FP A+L G+YR ++ + P+S L + P+WV + + + + YMR V +
Sbjct: 953 FPHTAKLQKNGSYRTVKHPQTVHIHPNSGL-SQVLPRWVVYHELVLT-SKEYMRQVTELK 1010
Query: 146 RSWLLELAPHYYK 158
WL+ELAPHYY+
Sbjct: 1011 PEWLIELAPHYYQ 1023
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 70.5 bits (165), Expect = 5e-13
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Query: 28 QWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMKCVLSGYF 87
QWC + R +++A DIRD LE +++ +E V + + + + K +++G+F
Sbjct: 967 QWCYENYIQVRSMKRARDIRDQLEGLLE---RVEIDVSSNAN----ELDSIRKSIVAGFF 1019
Query: 88 PQAARLTPAGAYRGLRGADLA-LSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPIDR 146
P A+L G+YR ++ + P S L + P+WV + + + + YMR V +
Sbjct: 1020 PHTAKLQKNGSYRTVKHPQTVHIHPASGL-SQVLPRWVVYHQLVLT-SKEYMRQVTELKP 1077
Query: 147 SWLLELAPHYYK 158
WL+E+APHYY+
Sbjct: 1078 EWLIEIAPHYYQ 1089
>At5g14900.1 68418.m01748 helicase associated (HA2)
domain-containing protein similar to SP|P53131 Pre-mRNA
splicing factor RNA helicase PRP43 (Helicase JA1)
{Saccharomyces cerevisiae}; contains Pfam profile
PF04408: Helicase associated domain (HA2)
Length = 301
Score = 67.3 bits (157), Expect = 5e-12
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 29 WCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCE-RVMKCVLSGYF 87
WC +N+R ++ A +R+ L +I+ +F I+ PD + + K +L+GYF
Sbjct: 141 WCCTKFINYRAMKSAVSVREQLVRIML-RFQIK---LCSPDFNSRDYYVNIRKALLAGYF 196
Query: 88 PQAARLTPAGAYRGLRGAD---LALSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPI 144
Q A L G Y R D + L P +CL P+WV + + R ++R V I
Sbjct: 197 MQVAHLERTGHYLTFRDKDDQVVHLHPSNCL--DHKPEWVVYNEYVFT-SRNFIRTVTHI 253
Query: 145 DRSWLLELAPHYYK 158
WL+++APHYYK
Sbjct: 254 RGEWLVDVAPHYYK 267
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 64.5 bits (150), Expect = 3e-11
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 2 YLNIF---DSYLRVRSSCEDKRKSERACKQWCQRYRLNHRVLEKAADI-RDSLEKIVKGK 57
YL+++ D +L R + ++ K+WC+ +N R L+ A DI R E + +
Sbjct: 563 YLSVYRESDEFLEKRKAAGSGNNIDKIMKKWCKENYVNSRSLKHARDIYRQIREHVEQIG 622
Query: 58 FNIENKVFEGPDLGTAKCERVMKCVLSGYFPQAARLTPAGAYRGLRGADLA-LSPDSCLY 116
FN+ + G D+ + +C+ + +F +AA+ G YR L ++ + P S L+
Sbjct: 623 FNVSSC---GNDMLAFR-----RCLAASFFLKAAQRQLDGTYRALESGEVVHIHPTSVLF 674
Query: 117 AAPPPQWVTFASVQCSRDRTYMRDVMPIDRSWLLELAPHYYK 158
A P + V F + + Y++++ ID WL ELAPH+++
Sbjct: 675 RAKP-ECVIFNELM-QTSKKYIKNLTIIDSLWLSELAPHHFQ 714
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative similar
to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00575:
S1 RNA binding domain
Length = 1168
Score = 61.3 bits (142), Expect = 3e-10
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 21 KSERACKQWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMK 80
K++ WC + R L +A D+R L I+ K+ ++ V G + ++ K
Sbjct: 1003 KAKNFSGPWCFENFIQSRSLRRAQDVRKQLLSIMD-KYKLD-VVTAGKNF-----TKIRK 1055
Query: 81 CVLSGYFPQAARLTPAGAYRGL-RGADLALSPDSCLYAAPPPQWVTFASVQCSRDRTYMR 139
+ +G+F AR P YR L + + P S L+ P WV + + + + YMR
Sbjct: 1056 AITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQP-DWVIYHDLVMTT-KEYMR 1113
Query: 140 DVMPIDRSWLLELAPHYYK 158
+V ID WL+ELAP ++K
Sbjct: 1114 EVTVIDPKWLVELAPRFFK 1132
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 60.9 bits (141), Expect = 4e-10
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 29 WCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIE--NKVFEGPDLGTAKCERVMKCVLSGY 86
WC +N+R ++ A ++R L +I+ +FN++ + F D + K +L+GY
Sbjct: 570 WCYENFINNRAMKSADNVRQQLVRIMS-RFNLKMCSTDFNSRDYYI----NIRKAMLAGY 624
Query: 87 FPQAARLTPAGAYRGLRGADLA-LSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPID 145
F Q A L G Y ++ + L P +CL P+WV + + R ++R V I
Sbjct: 625 FMQVAHLERTGHYLTVKDNQVVHLHPSNCL--DHKPEWVIYNEYVLT-SRNFIRTVTDIR 681
Query: 146 RSWLLELAPHYY 157
WL+++A HYY
Sbjct: 682 GEWLVDVASHYY 693
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 59.7 bits (138), Expect = 9e-10
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 29 WCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIE--NKVFEGPDLGTAKCERVMKCVLSGY 86
WC +N+R ++ A ++R L +I+ +FN++ + F D + K +L+GY
Sbjct: 574 WCFENFVNNRAMKSADNVRQQLVRIMS-RFNLKMCSTDFNSRDYYV----NIRKAMLAGY 628
Query: 87 FPQAARLTPAGAYRGLRGADLA-LSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPID 145
F Q A L G Y ++ + L P +CL P+WV + + R ++R V I
Sbjct: 629 FMQVAHLERTGHYLTVKDNQVVHLHPSNCL--DHKPEWVIYNEYVLTT-RNFIRTVTDIR 685
Query: 146 RSWLLELAPHYY 157
WL+++A HYY
Sbjct: 686 GEWLVDVAQHYY 697
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 54.0 bits (124), Expect = 5e-08
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 29 WCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMKCVLSGYFP 88
WC + L + L KA ++R L I+K + IE + GPD + V K + S YF
Sbjct: 1029 WCNDHYLQVKGLRKAREVRSQLLDILK-QLKIELRSC-GPDW-----DIVRKAICSAYFH 1081
Query: 89 QAARLTPAGAYRGLR-GADLALSPDSCLYA-APPPQWVTFASVQCSRDRTYMRDVMPIDR 146
+ARL G Y R G L P S LY P +V + + + + YM+ ++
Sbjct: 1082 NSARLKGVGEYVNCRTGMPCHLHPSSALYGLGYTPDYVVYHELILT-TKEYMQCATSVEP 1140
Query: 147 SWLLELAPHYY 157
WL EL P ++
Sbjct: 1141 HWLAELGPMFF 1151
>At2g14800.1 68415.m01677 hypothetical protein
Length = 580
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 5 IFDSYLRVRSSCEDKRKSERACKQWCQRYRLNHRVLEK 42
+FD ++ E K+K + K W +Y R+LEK
Sbjct: 159 VFDQMYHLKERLETKKKL-KGLKSWMFKYNFEKRILEK 195
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 12 VRSSCEDKRKSERACKQWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLG 71
+RS CE +RK K+ + +L ++ +K + ++L + + + + K LG
Sbjct: 349 MRSDCEQQRKEMEDMKRMVEELKLENQ--QKTRECEEALNSLSEIQNELMRKSMHVGSLG 406
Query: 72 TAKCERVM 79
T++ E M
Sbjct: 407 TSQREEQM 414
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 41 EKAADIRDSLEKIVKGKFNIENKVFEGPDL 70
E+ ADI + +EK+ +G IE +G D+
Sbjct: 1281 EREADITEKIEKVQEGPTVIETPTIQGEDI 1310
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 30 CQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMKCVL--SGYF 87
C + N +++ + I ++I G+ + +++V L T K + + SG F
Sbjct: 607 CNALQDNQVMIDHNSPIMQLDQQIYMGEEDDDDEVIVFKPLVTEKRKEASDQIYVPSGGF 666
Query: 88 PQAARLTPAGAYRGLRGADLALSPDSCLYA 117
++ ++T G ++ L G+D+A + L A
Sbjct: 667 RKSDQVTTMGDFKALSGSDVAFHENQILQA 696
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.136 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,008,058
Number of Sequences: 28952
Number of extensions: 155207
Number of successful extensions: 351
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 15
length of query: 160
length of database: 12,070,560
effective HSP length: 76
effective length of query: 84
effective length of database: 9,870,208
effective search space: 829097472
effective search space used: 829097472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -