GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000170-TA|BGIBMGA000170-PA|IPR011709|Protein of unknown
function DUF1605
         (160 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.6  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   2.2  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   2.2  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   5.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   8.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 22  SERACKQWCQRYRLNHR--VLEKAADIRDSLEKIVK--GKFNIENKVFEGPDLGTAKCE 76
           +ER  K W Q  R+ H+   L K  D  D  + I    GK    +  F   ++    C+
Sbjct: 44  TERQVKVWFQNRRMKHKRQTLGKQGDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQ 102


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 22  SERACKQWCQRYRLNHR--VLEKAADIRDSLEKIVK--GKFNIENKVFEGPDLGTAKCE 76
           +ER  K W Q  R+ H+   L K  D  D  + I    GK    +  F   ++    C+
Sbjct: 175 TERQVKVWFQNRRMKHKRQTLGKQGDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQ 233


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 17  EDKRKSERACKQWCQRYRLNHR 38
           E+   SER  K W Q  R+ H+
Sbjct: 123 ENLNLSERQIKIWFQNRRMKHK 144


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 17  EDKRKSERACKQWCQRYRLNHR 38
           E+   SER  K W Q  R+ H+
Sbjct: 114 ENLNLSERQIKIWFQNRRMKHK 135


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
          transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 18 DKRKSERACKQWCQRYRLNHRVLEKAADIRDSLEK 52
          D R+S +   +  +R R+N+ + E    I D+++K
Sbjct: 33 DNRRSNKPIMEKRRRARINNSLNELKTLILDAMKK 67


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 116 YAAPPPQWVTFASVQ 130
           Y+AP P + T+++VQ
Sbjct: 297 YSAPGPTYSTWSTVQ 311


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,526
Number of Sequences: 317
Number of extensions: 1601
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 114,650
effective HSP length: 52
effective length of query: 108
effective length of database: 98,166
effective search space: 10601928
effective search space used: 10601928
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)