Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000170-TA|BGIBMGA000170-PA|IPR011709|Protein of unknown
function DUF1605
(160 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 68 6e-13
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 57 1e-09
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 57 1e-09
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 56 3e-09
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 51 7e-08
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 48 7e-07
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 7.1
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 24 9.4
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 24 9.4
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 68.1 bits (159), Expect = 6e-13
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 28 QWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMKCVLSGYF 87
QWC++ LN++ L +A DIR L + + KF+I L ++ C +++KC+L G+
Sbjct: 524 QWCRKNYLNYQTLRQALDIRTHLVRFLN-KFSIPT----AQRLPSSDCSKILKCLLDGFV 578
Query: 88 PQAARLTPAGAYRGLRGADLALSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPIDRS 147
A L G+Y+ + G + L S L+ P W+ ++S S + +++++ I+
Sbjct: 579 RNVAHLQNDGSYKTIGGKQVWLDSSSVLHEKKTP-WIMYSSAVESETQIFVKNISKIESF 637
Query: 148 WL 149
WL
Sbjct: 638 WL 639
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 57.2 bits (132), Expect = 1e-09
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 29 WCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMKCVLSGYFP 88
W + L ++ L +A D+RD L + + + IE L K K + +GYF
Sbjct: 916 WARENFLQYKSLCRARDVRDQLANLCE-RVEIELVTNSSESLDPIK-----KAITAGYFS 969
Query: 89 QAARLTPAG-AYRGLRGADLA-LSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPIDR 146
AARL +G +YR ++ + P S + P + F V +++ Y R + I
Sbjct: 970 NAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKE--YCRQITEIQP 1027
Query: 147 SWLLELAPHYYK 158
WLLE++PHY+K
Sbjct: 1028 EWLLEISPHYFK 1039
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 56.8 bits (131), Expect = 1e-09
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 27 KQWCQRYRLNHRVLEKAADIRDSL-EKIVKGKFNIENKVFEGPDLGTAKCERVMKCVLSG 85
KQWC + +N R L+ DIR L E +K + + + P++ + E ++ LSG
Sbjct: 591 KQWCSQNFINRRALKTILDIRKQLREHCLKDGWELNS----SPEVNS---ENLLLSFLSG 643
Query: 86 YFPQAARLTPAGAYRGLRG-ADLALSPDSCLYAAPPPQWVTFASVQCSRDRTYMRDVMPI 144
Y A L P G+YR + G +++ P S L+ + V + ++Y+R V I
Sbjct: 644 YITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTT--KSYVRGVSSI 701
Query: 145 DRSWLLELAPHY 156
+WL +APHY
Sbjct: 702 RSNWLNAVAPHY 713
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 56.0 bits (129), Expect = 3e-09
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 21 KSERACKQWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTAKCERVMK 80
KS WC + L+HR L A ++R L + ++ + E ++ P + +
Sbjct: 572 KSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQ---EVELISTPFDDKNYYVNIRR 628
Query: 81 CVLSGYFPQAARLTPAGA-YRGLRGADLALSPDSCLYAAPPPQWVTFASVQCSRDRTYMR 139
++SG+F Q A+ + G Y ++ + SC + P +WV + + ++++R
Sbjct: 629 ALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGLSVTP-EWVVYNEFVLTT-KSFIR 686
Query: 140 DVMPIDRSWLLELAPHYY 157
+V I WL+ELAP+YY
Sbjct: 687 NVTAIRPEWLIELAPNYY 704
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 51.2 bits (117), Expect = 7e-08
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 21 KSERACKQWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKVFEGPDLGTA-KCERVM 79
K R WC + + R + +A D+R L +++ + P + K E ++
Sbjct: 999 KMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRLMDR--------YRHPVVSCGRKRELIL 1050
Query: 80 KCVLSGYFPQAA-RLTPAGAYRGL-RGADLALSPDSCLYAAPPPQWVTFAS-VQCSRDRT 136
+ + SGYF A R + G Y+ + A + + P L+ +WV + +Q S++
Sbjct: 1051 RALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAA-EWVIYHELIQTSKE-- 1107
Query: 137 YMRDVMPIDRSWLLELAPHYYK 158
YM V ++ WL+E+AP ++K
Sbjct: 1108 YMHTVSTVNPKWLVEVAPTFFK 1129
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 48.0 bits (109), Expect = 7e-07
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 29 WCQRYRLNHRVLEKAADIRDSLEKIV-KGKFNIENKVFEGPDLGTAKCERVMKCVLSGYF 87
WC ++ L+ + L++A DIR L +I+ K K ++E+ + + V + + S YF
Sbjct: 987 WCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLES---------VSDWDIVRRVLCSAYF 1037
Query: 88 PQAARLTPAGAYRGLR-GADLALSPDSCLYA-APPPQWVTFASVQCSRDRTYMRDVMPID 145
QAA G Y LR G L S LY P +V + + + + YM V +D
Sbjct: 1038 HQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLT-SKEYMNIVTSVD 1096
Query: 146 RSWLLELAPHYY 157
WL E YY
Sbjct: 1097 PYWLAEFGGVYY 1108
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 108 ALSPDSCLYAAPPPQWVTFASVQ-CSRDRTYMRDVMPIDRSWLLELAPH 155
AL P L AAPP +V+F+ S YM + + ++S LL H
Sbjct: 698 ALHPSFDLQAAPPNSYVSFSDDDFISATLLYMLEDVSRNKSQLLAEKKH 746
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 7 DSYLRVRSSCEDKRKSERACKQWCQRYRLNHRVLEKAAD 45
DS +R +S E + R C W Q +L R+L +
Sbjct: 296 DSQIRADASLEKPMVTIRRCIAWTQVAKLKLRILSSVVN 334
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 17 EDKRKSERACK--QWCQRYRLNHRVLEKAADIRDSLEKIVKGKFNIENKV 64
+D KSER + +YRL H+V E I LE++ K N E ++
Sbjct: 29 KDAIKSEREGNLGESLNKYRLAHKVHEDVESIYRRLERLQLCKRNEEEEM 78
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 101 GLRGADLALSPDSCLYAAPPPQWVTFASV 129
G G D +LSP YAA P++V S+
Sbjct: 223 GKIGGDSSLSPQGLKYAALLPEYVAKFSI 251
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.136 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,543
Number of Sequences: 5004
Number of extensions: 28014
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 10
length of query: 160
length of database: 2,362,478
effective HSP length: 68
effective length of query: 92
effective length of database: 2,022,206
effective search space: 186042952
effective search space used: 186042952
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)
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