Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000169-TA|BGIBMGA000169-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 31 0.35
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 0.80
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 28 2.4
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun... 27 4.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 5.6
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 7.4
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 9.8
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 26 9.8
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 30.7 bits (66), Expect = 0.35
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 147 VLFQIRMFLDDLDGHVARERKHIRGERSEV-GSLGYWVDGI-CDLIGVVAMMLGIFVYFK 204
+L IR D++ +A + + R + +++ S+ ++D IG+ M+LG ++
Sbjct: 170 LLNTIRTRHDNVAVEIALDIQEYRRKTNQIDNSIQIFLDRFYMSRIGI-RMLLGQYIALV 228
Query: 205 QYPPRRGYRGTSASALPYYQLKEMNAAEN 233
PPR Y G ++ YQ+ E AAEN
Sbjct: 229 SEPPRENYVGVISTRANIYQIIE-GAAEN 256
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 29.5 bits (63), Expect = 0.80
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 75 PLCHPTVKALMVDHINHYIYGPLCAILDKALRISDRMLF 113
P C AL +DH+N++++ ILD+AL LF
Sbjct: 120 PKCSLPTSALEIDHLNNFLHSS-AKILDRALCDQSNQLF 157
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 187 CDLIGVVAMMLGIFVYFKQYPPRRGYRGTSASA-LPYYQLKEMNAAENMEKDHASDVGI 244
C L+ V+A L +FVY +++PP + T +A + + + +++ +H S +G+
Sbjct: 112 CKLLPVIA--LHVFVYKRKFPPHKYLIVTMITAGVSIFSYFQNTSSKGKHAEHDSPIGL 168
>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 295 LVTFRSVRFFCATLMWRILNPHSYLHVLSLAVFIDKTWSLLKSVRYIGYVLLLLAVFVTE 354
++ + S F +W ++ P +S +F+D+ W++ V + + + L+ FV+
Sbjct: 1 MIVYISTAAFLYYTIWVLIMPFVDNMNISQKLFLDREWAITIPVAVMLFGICLIGTFVSL 60
Query: 355 YLI 357
+I
Sbjct: 61 LMI 63
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 226 KEMNAAENMEKDHASDVGISYKTKVSLKAIIQVIILFSGQMVLSSVAWN 274
K +N E+ E++ S G+SY T +L+ ++++II + +S N
Sbjct: 203 KSLNICEDAEQN-VSVPGLSYFTPTNLEEVMEIIIRGNSNRTMSPTEAN 250
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 156 DDLDGHVARERKHIRGERSEVG 177
DDLD + +RKH+ GE +E G
Sbjct: 77 DDLDYSPSVKRKHVNGEGAEKG 98
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 245 SYKTKVSLKAIIQVIILFSGQMVLSSVAWNRYINVYQEMFENGNGYLAG 293
+YKT + I+ +LF G ++ +N + V+Q + N Y+ G
Sbjct: 87 TYKTHIGHPKFIEPFVLFYGDRLVHDARYNLHELVWQTLSRNPE-YIKG 134
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 9.8
Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 246 YKTKVSLKAIIQVIILFSGQM-VLSSVAWNRYINVYQEMFENGNGYLAGRLVTFRSVRFF 304
+ +K+ L +I + L+ + ++ + ++R+ GYLAG ++ + +
Sbjct: 318 FASKLPLYVVIGQLSLYGSIISIIQTFIFDRHHLYTLHWTSEMGGYLAGFILVM-FLLYS 376
Query: 305 CATLMWRILNPHSYLHVLSLAVFIDKTWSLLKSVRYIGY----------VLLLLAVFVTE 354
A +++R+ + Y ++++ WSL+ + GY VL++L +FV
Sbjct: 377 LAPILFRMSSATFY----NISLLTSDFWSLVIGIHVFGYHVYWLYPIAFVLIILGLFVYH 432
Query: 355 YLISGFEASVK 365
+ S+K
Sbjct: 433 VFVDATRESIK 443
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.328 0.141 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,535
Number of Sequences: 5004
Number of extensions: 56754
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 8
length of query: 371
length of database: 2,362,478
effective HSP length: 74
effective length of query: 297
effective length of database: 1,992,182
effective search space: 591678054
effective search space used: 591678054
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)
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