GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000169-TA|BGIBMGA000169-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (371 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    31   2.0  

>01_01_0774 -
           6004040-6004371,6004634-6005215,6005391-6005657,
           6005845-6006163
          Length = 499

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 153 MFLDDLDGHVARERKHIRGERSEVGSLGYW 182
           MF+DD    V      + GER E G++G W
Sbjct: 237 MFIDDATHRVLASHNILAGERGEAGTIGAW 266


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,329,372
Number of Sequences: 37544
Number of extensions: 346293
Number of successful extensions: 839
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 1
length of query: 371
length of database: 14,793,348
effective HSP length: 83
effective length of query: 288
effective length of database: 11,677,196
effective search space: 3363032448
effective search space used: 3363032448
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)