GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000169-TA|BGIBMGA000169-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)              119   3e-27
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 29   6.1  

>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score =  119 bits (287), Expect = 3e-27
 Identities = 75/280 (26%), Positives = 139/280 (49%), Gaps = 17/280 (6%)

Query: 80   TVKALMVDHINHYIYGPLCAILDKALRISDRMLFLTPNTISCAHVFIAMIGANLLTCPNL 139
            ++K  M DH +HYI  PL  + +  L IS+ +  +TPN IS  H+F A++ A  +T   L
Sbjct: 812  SIKLRMQDHTSHYINLPLMELAEDKLGISN-IPGVTPNLISGTHLFCAIVAAKCMTSGQL 870

Query: 140  SVRRMGIVLFQIRMFLDDLDGHVARERKHIRGE-RSEVGSLGYWVDGICDLIGVVAMMLG 198
             +RR G+ L+++R  LD LDG V R + + R    S  GS+GY VD   D  G + + L 
Sbjct: 871  GMRRFGVALYELRYQLDILDGVVYRAQANKRNSYASGFGSIGYLVDAFTDFCGGILLALS 930

Query: 199  IFVYFKQYPPRRGYRGTSASALPYYQLKEMNAAENMEKDHASDVGISYKTKVSLKAIIQV 258
              ++  +YPP +  +         Y  +E+    ++         +     +S + ++  
Sbjct: 931  CALFLSRYPPLKRVK------TRIYGDQELGRKSSLMYGEGE---VDKFVHLSRRTVMVK 981

Query: 259  IILFSGQMVLSSVAWNRYINVYQEMFENGN----GYLAGRLVTFRSVRFFCATLMWRILN 314
            + L + Q+VL S  W+ ++  Y ++ E  N     ++   ++ +RS   +     W++ +
Sbjct: 982  MFLVTLQIVLRSALWDYFLRNYHDLLERRNPQIPQFMQEEVLDYRST--WLVMWFWKLSS 1039

Query: 315  PHSYLHVLSLAVFIDKTWSLLKSVRYIGYVLLLLAVFVTE 354
              + L    LAV  DK W  ++ + YIG++ L++   +++
Sbjct: 1040 ADAALQFTLLAVLFDKLWMWVQLLNYIGWIQLVIVALISQ 1079



 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 81  VKALMVDHINHYIYGPLCAILDKALRISDRMLFLTPNTISCAHVFIAMIGANLLTCPNLS 140
           +K  M +HI+HYI  PL  + ++ L IS  +  +TPN IS +H   A I    L   NL+
Sbjct: 538 IKLRMTEHIDHYINLPLMKLANENLGISS-IPGVTPNVISFSHFICACISIKFLISGNLA 596

Query: 141 VRRMGIVLFQIRMFLDDLDGHVARERKHIRGERSEVGSLGYWVDGICDLIGVVAMMLGIF 200
           +RR+G  +++ R  LD LDG V R + H +   S  GS GY VD   D  G + +  GI 
Sbjct: 597 IRRIGCCIYEFRNQLDLLDGVVYRAQAHQKTYVSGWGSWGYLVDAAMDFGGGLLLAFGIG 656

Query: 201 VYFKQYPPRRGYRGTSASALPYYQLKEMNAAENMEKDHASDVGISYKTKVSLKAIIQVII 260
           V+ ++YPP +  R  S       +L     AE +  +  +   + +      +AI   ++
Sbjct: 657 VFLQRYPPLKRVRIHSRDVESSRKL----LAEKVLDERPAFAHVHF----DRRAITVKVL 708

Query: 261 LFSGQMVLSSVAWNRYINVYQEMFE 285
           L + Q V  S  W+ +I  Y E+ E
Sbjct: 709 LATVQAVARSGIWDYFIKSYHELLE 733


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 85  MVDHINHYIYGPL--CAILDKALRISDRMLFLTPNTISCAHVFI 126
           ++++++H +Y  +  C+  D A+++  ++   TPN I   H+ +
Sbjct: 12  LINYVSHNVYEYIEDCSTYDSAIQVLKQLFIKTPNEIFARHLLL 55


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 276 YINVYQEMFENGNGYLAGRLVTFRSVRFFC 305
           +IN   +  + G GYL G  +T+  + FFC
Sbjct: 114 FINKLFQENKGGKGYLVGDKITYADIDFFC 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,959
Number of Sequences: 59808
Number of extensions: 396024
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 5
length of query: 371
length of database: 16,821,457
effective HSP length: 83
effective length of query: 288
effective length of database: 11,857,393
effective search space: 3414929184
effective search space used: 3414929184
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)