GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000169-TA|BGIBMGA000169-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (371 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.60 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             26   0.60 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 14/37 (37%), Positives = 16/37 (43%)

Query: 60  ALSYEDVVWIPCSVNPLCHPTVKALMVDHINHYIYGP 96
           AL Y    WI  S     HP  KA + D I + I  P
Sbjct: 185 ALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGIVSP 221


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 14/37 (37%), Positives = 16/37 (43%)

Query: 60  ALSYEDVVWIPCSVNPLCHPTVKALMVDHINHYIYGP 96
           AL Y    WI  S     HP  KA + D I + I  P
Sbjct: 180 ALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGIVSP 216


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 105 LRISDRMLFLTPNTISCAHVFIAMIGANL 133
           L +SDR   +  N ++  HV   ++GAN+
Sbjct: 377 LALSDRNQNVLNNDLNLEHVNFQILGANV 405


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,991
Number of Sequences: 429
Number of extensions: 3464
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 371
length of database: 140,377
effective HSP length: 59
effective length of query: 312
effective length of database: 115,066
effective search space: 35900592
effective search space used: 35900592
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 44 (21.8 bits)