GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000169-TA|BGIBMGA000169-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (371 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20680.1 68416.m02617 expressed protein                             31   0.94 
At3g51340.1 68416.m05620 aspartyl protease family protein contai...    30   2.9  
At5g24130.1 68418.m02837 expressed protein                             29   3.8  
At2g42005.1 68415.m05196 amino acid transporter family protein l...    28   8.7  

>At3g20680.1 68416.m02617 expressed protein
          Length = 338

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 79  PTVKALMVDHINHYIYGPLCAILDKALRISDRMLFLTP 116
           P VKA   D I+H    P+   L  ALR +D  +F+ P
Sbjct: 162 PAVKAFRSDSIHHIAMSPVSDSLKTALRSADVAIFMAP 199


>At3g51340.1 68416.m05620 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 518

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 65  DVVWIPCSVNPLC-HPTVKALMVDHINHYIYGPLCAILDKALRISDRMLF 113
           D+ W+PC+    C H    A   + +   +Y P  +    ++R SD+  F
Sbjct: 113 DLFWLPCNCGTTCIHDLKDARFSESVPLNLYTPNASTTSSSIRCSDKRCF 162


>At5g24130.1 68418.m02837 expressed protein 
          Length = 316

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 186 ICDLIGVVAMMLGIFVYFKQYPPRRGYRGTSASAL 220
           +  + G V   LGIF  F Q   +RGY G    AL
Sbjct: 101 LVQIAGSVVFFLGIFFVFHQAETKRGYSGREHHAL 135


>At2g42005.1 68415.m05196 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 413

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 122 AHVFIAMIGANLLTCPNLSVRRMGIVLFQIRMF-LDDLDGHVARERKHIRGER--SEVGS 178
           A+VFIA++GA +L  P  + +R G ++  + +F +  L  H      HIR +   S +GS
Sbjct: 30  ANVFIAIVGAGVLGLP-YAFKRTGWLMGLLTLFSVAALINHCMMLLVHIRRKLGVSNIGS 88

Query: 179 LGYWVDGICDLIG 191
            G      C  +G
Sbjct: 89  FGDLGFAACGNLG 101


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,637,306
Number of Sequences: 28952
Number of extensions: 290898
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 4
length of query: 371
length of database: 12,070,560
effective HSP length: 82
effective length of query: 289
effective length of database: 9,696,496
effective search space: 2802287344
effective search space used: 2802287344
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)