Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000168-TA|BGIBMGA000168-PA|undefined
         (693 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   7.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   9.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   9.3  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 336 LKMHPKQVNADQDLLKFGNDNNLPLISNKQN 366
           L +HP +++ +Q  L   ND N+    ++QN
Sbjct: 291 LSIHPSKLDVEQMNLLHSNDLNMHQQHHQQN 321


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 171 NNLFDTNDNINSDNLKQLNDFIIQQSHVKS 200
           +N F  N   +  N+   NDFIIQ  H+ S
Sbjct: 568 SNYF-ANKTYDFHNMSFENDFIIQPKHLLS 596


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 299 IESPENNHAFSKTILFNKYMQKT-PEVNPITNALADYNLKMHPKQVNADQDLLKFGNDNN 357
           + +P N++A   + L +     T P   P T+  +  NL       ++     K G +NN
Sbjct: 129 LSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQ-NLSSPASSTSSTSSTEKAGTNNN 187

Query: 358 LPLISNKQNQP 368
               S   N P
Sbjct: 188 NSKSSQSSNPP 198


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,235
Number of Sequences: 317
Number of extensions: 6790
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 3
length of query: 693
length of database: 114,650
effective HSP length: 61
effective length of query: 632
effective length of database: 95,313
effective search space: 60237816
effective search space used: 60237816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)