Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000168-TA|BGIBMGA000168-PA|undefined
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0482 + 21307314-21307458,21308747-21308850,21308924-213090... 35 0.19
02_02_0117 - 6963648-6963784,6963922-6963989,6964379-6964456,696... 35 0.19
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680... 34 0.44
01_01_1230 - 9936226-9936706,9938145-9938200,9939145-9939233,994... 33 0.58
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 31 4.1
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903... 31 4.1
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 30 5.4
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 30 7.1
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 30 7.1
05_01_0187 + 1349725-1352238 30 7.1
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 29 9.4
03_06_0386 + 33555682-33556344,33557138-33557299 29 9.4
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 29 9.4
>06_03_0482 +
21307314-21307458,21308747-21308850,21308924-21309019,
21309264-21309383,21310049-21310246,21310392-21310483,
21310848-21310966,21311722-21311845,21312016-21312139,
21312998-21313066,21313146-21313237,21313330-21313407,
21313677-21313744,21313842-21313978
Length = 521
Score = 35.1 bits (77), Expect = 0.19
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 247 SHDFNVNKIQQNAEEELKKYLSQDNVSINLFNLSQDN 283
+HD+++N I N++ E Y+S D++ INL+NL +N
Sbjct: 240 AHDYHINSISTNSDGET--YISADDLRINLWNLEINN 274
>02_02_0117 -
6963648-6963784,6963922-6963989,6964379-6964456,
6964556-6964647,6964735-6964803,6965360-6965483,
6965640-6965763,6966568-6966686,6966965-6967056,
6967251-6967454,6967823-6967942,6968687-6968782,
6968862-6968965,6970714-6970861
Length = 524
Score = 35.1 bits (77), Expect = 0.19
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 247 SHDFNVNKIQQNAEEELKKYLSQDNVSINLFNLSQDN 283
+HD+++N I N++ E Y+S D++ INL+NL N
Sbjct: 243 AHDYHINSISNNSDGET--YISADDLRINLWNLEISN 277
>01_05_0600 +
23566223-23566355,23567752-23567855,23567958-23568053,
23568134-23568253,23568543-23568710,23568921-23569012,
23569739-23569857,23570547-23570670,23570801-23570924,
23571291-23571359,23571470-23571561,23571645-23571722,
23571927-23571994,23572073-23572209
Length = 507
Score = 33.9 bits (74), Expect = 0.44
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Query: 247 SHDFNVNKIQQNAEEELKKYLSQDNVSINLFNLSQDNLTNKKDSLINIFGNKIE 300
+HD+++N I N++ E ++S D++ INL+NL ++N+ ++I++ +E
Sbjct: 226 AHDYHINSISNNSDGET--FISADDLRINLWNL---EISNQSFNIIDVKPTNME 274
>01_01_1230 -
9936226-9936706,9938145-9938200,9939145-9939233,
9940820-9940923,9943756-9943931,9945130-9945713,
9947441-9947513
Length = 520
Score = 33.5 bits (73), Expect = 0.58
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 252 VNKIQQNAEEELK--KYLSQDNVSINLFNLSQDNLTNKKDSLINIFGNKIE-SPENNHAF 308
V ++Q N E L K +SQ N+ N +N K DS+ +E SP N F
Sbjct: 24 VEEMQVNKEAPLGCLKPISQYNLQEQRSNGFPENSEKKNDSIAT--ERVLEASPLPNQGF 81
Query: 309 SKTILFNKYMQKTPEVNPITNALADYNLKMHPKQVNADQDLLKFGNDNNLPLISNKQNQP 368
+ + Q+T E ADY + P+ N D + D++ P+ S Q P
Sbjct: 82 FRPV------QRT-EYYAYPFIYADYQMPGQPQPYNLDNQFYQINRDHSFPIESRVQYLP 134
Query: 369 IGSLVFKNTPNTLTDKPVLEDFEQYLKVVN 398
FK P L++F QY V++
Sbjct: 135 -----FKMPPQGYPPDAQLQEF-QYFVVID 158
>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 30.7 bits (66), Expect = 4.1
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 289 DSLINIFGNKIESPENNHAFSKTILFNKYMQKTPEVNPITNALADYNLKMHPKQVNADQD 348
DSL G+ IE N+H+F K + + +Q + N L ++ + N ++
Sbjct: 1433 DSLEGSHGHIIEKEVNDHSFEKEVGDHICLQAQEDHNE--KELDSHSTEKELGDHNKTEE 1490
Query: 349 LLKFGNDNNLPLISNKQNQPIGSLVFKNTPNTLTDKPVLEDFEQYLKVVNNLNKAQTIDK 408
D N+ ++ N + L +T L D +E+F+ +++ NLN + +D
Sbjct: 1491 F-----DGNMKVLFNLNSTK--ELDSTSTEKELGDHNKIEEFDVNMEMFFNLNNTKELDS 1543
Query: 409 PVENV 413
E++
Sbjct: 1544 TGESI 1548
>07_01_1180 -
11188789-11188797,11189032-11189068,11190328-11190392,
11190464-11190562,11190707-11190878,11190973-11191325,
11191451-11191561,11191637-11191708,11192203-11192420,
11192546-11192594,11192697-11192750,11192876-11192958,
11193088-11193304,11193387-11193510,11194042-11194105,
11194413-11194500,11194623-11194724,11194842-11194937
Length = 670
Score = 30.7 bits (66), Expect = 4.1
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 29/186 (15%)
Query: 151 PDEVVKNIIISFYNFKPKAFNN------LFDTNDNINSDNLKQLNDFIIQQSHVKSTSSI 204
P ++ K + F KP F++ ++D++DN+ S+ + + +KS+ +
Sbjct: 298 PPKITKARFVGFNERKPIYFDHEKPQFQIWDSDDNLRSE--------VTPRHGLKSSKIV 349
Query: 205 DQSGNIVYKVENPEAIQIISEILNAVLMKLFDLHKNIANGPVSHDFNVNKIQQNAEEELK 264
S Y P + I + L+DL +N N + D + +++E +
Sbjct: 350 PDS----YSPACPTELNKTKIIPLDLSQNLYDLSQNQENNSENKDQLIMVTLEDSETQ-- 403
Query: 265 KYLSQDNVSINLFNLSQ--DNLTNKKDSLINIFGNKIESPEN-NHAFSKT-ILFNKYMQK 320
SQ N NL Q + NKKDSL +F + +S EN SKT +L+NK
Sbjct: 404 ---SQHNEKENLPVQQQYTKSTENKKDSLEVVFLGERQSTENCLDITSKTNVLYNKI--N 458
Query: 321 TPEVNP 326
T VNP
Sbjct: 459 TFIVNP 464
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 30.3 bits (65), Expect = 5.4
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 199 KSTSSIDQSGNIVYKVE--NPEAIQIISEILNAVLMKLFDLHKNIANGPVSHDFNVNKIQ 256
K+++ D ++ KVE +P A + E+ + K+F LH+ I N ++ + + +
Sbjct: 929 KNSTIADVINDLKTKVELSSPSAELRLLEVFYHKIYKIFPLHEKIEN--INDQYWTLRAE 986
Query: 257 QNAEEELKKYLSQDNVSINLFNLSQDNLTNKK 288
+ EEE K L ++ I++++ +D L N++
Sbjct: 987 EIPEEE--KNLGPNDRLIHVYHFMKDPLQNQQ 1016
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 266 YLSQDNVSINLFN--LSQDNLTNKKDSLINIFGNKIESPENNHAFSKTILFNKYMQKTP 322
+++ N++ ++ N L + N + +N+FG+ I S EN +S+ I + +QK P
Sbjct: 691 FVAPGNLAYSVTNNYLPEGNKHRTMATRVNVFGHGIHSTENQGFYSEGIQVHSSVQKIP 749
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 29.9 bits (64), Expect = 7.1
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 598 LQKLMCNVEPKDILELHKQNILNGNGDNLKMQQSTSPSQNLNMNSLVSKAYYQQPLWNNW 657
L + +CN+ L++ LN N TSP Q L LVS +++ P W NW
Sbjct: 725 LLESLCNLHKIQTLDIDLN--LNPNEGVTWDAGFTSP-QCLRYLCLVSLRFHRMPEWINW 781
Query: 658 KASLAPNFLY 667
SL PN Y
Sbjct: 782 --SLLPNLSY 789
>05_01_0187 + 1349725-1352238
Length = 837
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 266 YLSQDNVSINLFN--LSQDNLTNKKDSLINIFGNKIESPENNHAFSKTILFNKYMQKTP 322
+++ N++ ++ N L + N + +N+FG+ I S EN +S+ I + +QK P
Sbjct: 654 FVAPGNLAYSVTNNYLPEGNKHRTMATRVNVFGHGIHSTENQGFYSEGIQVHSSVQKIP 712
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 29.5 bits (63), Expect = 9.4
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 296 GNKIESPENNHAFSKTILFNKYMQKTPEVNPITNALADY------NLKMHPKQVNADQDL 349
GNKI E H K + + K + +A+Y NL +P Q N D
Sbjct: 496 GNKISDVEGLHRLLKLAVLDLGFNKVTTARALGQLVANYHSLRALNLVGNPVQANVGDDA 555
Query: 350 LKFGNDNNLPLISNKQNQPI 369
L+ LP ++ QP+
Sbjct: 556 LRRAVTGLLPHLAYLNKQPV 575
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 29.5 bits (63), Expect = 9.4
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 377 TPNTLTD-KPVLEDFEQYLKVVNNLNKAQTIDKPVENVE 414
TP+ D K V F++Y ++ KA ID PVENVE
Sbjct: 235 TPDFWRDTKFVKSPFQEYTDLLAKPTKALMIDAPVENVE 273
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 29.5 bits (63), Expect = 9.4
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 39 ENDKIDLILNDAQEMLRKLTTDKKYRFSSLQPIPKEGEFQVLNTRITDNEPNSKIGCRD 97
EN+ +++L +EML + + D + RFSS + I EG + +++ P++ +D
Sbjct: 235 ENETAEVVLKLNKEMLGQNSVDNESRFSSAE-ICMEGGLSTIKDQLSGETPSTSHDNKD 292
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,360,062
Number of Sequences: 37544
Number of extensions: 680844
Number of successful extensions: 1214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 17
length of query: 693
length of database: 14,793,348
effective HSP length: 87
effective length of query: 606
effective length of database: 11,527,020
effective search space: 6985374120
effective search space used: 6985374120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -