GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000168-TA|BGIBMGA000168-PA|undefined
         (693 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   6.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   8.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   8.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/56 (21%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 503 ELTYIFN-IDPFVQTKYVKYRVPIIKLYELLLKKPILKDQPTNLYHDLVLVANVSD 557
           ++T+ F+ + P +  K+         ++EL+  +PIL ++P++   + +L+++  D
Sbjct: 242 KITHFFDLVRPLIAFKFHSILNRTNNIFELVTVEPILTERPSDRQRNEILLSDELD 297


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 506 YIFNIDPFVQTKYVKYRVP 524
           + FNI  FV  KY+ Y  P
Sbjct: 507 FTFNIIKFVPVKYLTYEYP 525


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 506 YIFNIDPFVQTKYVKYRVP 524
           + FNI  FV  KY+ Y  P
Sbjct: 560 FTFNIIKFVPVKYLTYEYP 578


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 164 NFKPKAFNNLFDTNDNINSDNLKQLNDFIIQQSHVKS 200
           NF P+   N ++   N+ +  L  L+D    Q +V+S
Sbjct: 151 NFHPRCAVNNYNDPSNVRNCELVGLHDLDQSQEYVRS 187


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 83  RITDNEPNSKIGCRDALKLMTEFKMSTELIN 113
           RI    P     C D LKL+++  M  E ++
Sbjct: 52  RINSKSPLLSCACPDGLKLLSDGLMCVEKVS 82


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 606 EPKDILELHKQNILNGNGDNLKMQQSTSPSQNLNMNSLVSKAYY 649
           EPK I  L  + I N N  N     +   + N N  +   K YY
Sbjct: 311 EPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,478
Number of Sequences: 429
Number of extensions: 9147
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 7
length of query: 693
length of database: 140,377
effective HSP length: 62
effective length of query: 631
effective length of database: 113,779
effective search space: 71794549
effective search space used: 71794549
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)