Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000168-TA|BGIBMGA000168-PA|undefined
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A... 35 0.21
At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A... 35 0.21
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote... 33 0.48
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 33 0.84
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c... 33 0.84
At1g50660.1 68414.m05696 expressed protein similar to liver stag... 32 1.1
At5g13660.1 68418.m01590 expressed protein 32 1.5
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 31 2.6
At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A... 31 2.6
At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A... 31 2.6
At5g04110.1 68418.m00397 DNA topoisomerase II family protein sii... 31 3.4
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 30 4.5
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 30 5.9
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 30 5.9
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 30 5.9
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 30 5.9
At1g80620.1 68414.m09461 ribosomal protein S15 family protein si... 30 5.9
At3g14300.1 68416.m01809 pectinesterase family protein contains ... 29 7.8
At2g34170.1 68415.m04182 expressed protein contains Pfam profile... 29 7.8
>At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 512
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/54 (29%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 247 SHDFNVNKIQQNAEEELKKYLSQDNVSINLFNLSQDNLTNKKDSLINIFGNKIE 300
+HD+++N I N++ E ++S D++ INL+NL ++N+ +++++ K+E
Sbjct: 231 AHDYHINSISNNSDGET--FISADDLRINLWNL---EISNQSFNIVDVKPAKME 279
>At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 513
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/54 (29%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 247 SHDFNVNKIQQNAEEELKKYLSQDNVSINLFNLSQDNLTNKKDSLINIFGNKIE 300
+HD+++N I N++ E ++S D++ INL+NL ++N+ +++++ K+E
Sbjct: 232 AHDYHINSISNNSDGET--FISADDLRINLWNL---EISNQSFNIVDVKPAKME 280
>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
kinase, putative
Length = 882
Score = 33.5 bits (73), Expect = 0.48
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 180 INSDNLKQLNDFIIQQSHVKSTSSIDQSGNIVYKVENPEAIQIISEILNAVLMKLFDLHK 239
+N NL + + S+ + +D SGN +E +I ++LN +K+ DLH+
Sbjct: 361 LNLHNLNLIGEVPEDISNCRVLLELDVSGN---DLEG----KISKKLLNLTNIKILDLHR 413
Query: 240 NIANGPVSHDF-NVNKIQ--QNAEEELKKYLSQDNVSINL---FNLSQDNLT 285
N NG + + N++K+Q ++ L + S+N FN+S +NL+
Sbjct: 414 NRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLS 465
>At5g58160.1 68418.m07280 formin homology 2 domain-containing protein
/ FH2 domain-containing protein low similarity to
SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 32.7 bits (71), Expect = 0.84
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 160 ISFYNFKPKAFNNLFDTNDNINSDNLKQLNDFIIQQ-SHVKSTSSIDQSGNIVYKVENPE 218
+SFY+ + +F ++ + D+L+ L + I + K SS++ + I K E
Sbjct: 1095 VSFYSLRFCSFVDVLEEERYSLMDSLQILAEKIPEVLDFTKELSSLEPATKIQLKFL-AE 1153
Query: 219 AIQIISEILNAVLMKLFDLHKNIANGPVSHDFN--VNKIQQNAEEELKKYLS 268
+Q I++ L V+ +L L +N +GP+SH+FN + + AE E++ S
Sbjct: 1154 EMQAINKGLEKVVQEL-SLSEN--DGPISHNFNKILKEFLHYAEAEVRSLAS 1202
>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 280
Score = 32.7 bits (71), Expect = 0.84
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 322 PEVNPITNALADYNLK-MHPKQVNADQDLLKFGNDNNLPLISNKQNQPIGSLVFKNTPNT 380
P + ++ NL + P ++ Q ++ LP N+ N+ IG F + PNT
Sbjct: 46 PSIPVSSSPFVQSNLPPLPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNT 105
Query: 381 LTDKPVLEDFEQYL-KVVNNLNKAQTIDKPVENVETKAI 418
LT+ PV + ++ L ++V+NL K P KA+
Sbjct: 106 LTE-PVWDTVKRDLSRIVSNL-KLVVFPNPYREDPGKAL 142
>At1g50660.1 68414.m05696 expressed protein similar to liver stage
antigen-1 (GI:510184) [Plasmodium falciparum]; similar
to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
[Dictyostelium discoideum]; similar to liver stage
antigen (GI:9916) [Plasmodium falciparum]; similar to
Kinesin-like protein KLPA (Swiss-Prot:P28739)
[Emericella nidulans]
Length = 725
Score = 32.3 bits (70), Expect = 1.1
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 203 SIDQSGNIVYKVENPEAIQIISEILNAVLMKLFDLHKNIANGPVSHDFNVNKIQQNAEEE 262
+I + Y NP+ I + E +N ++ K++A P+SHD V+ + +A
Sbjct: 450 NIQEIKEFTYVPANPDDIYAVFEEMNLGEAHDREMEKSVAYSPISHDSKVHTVSLDANMM 509
Query: 263 LKKYLSQDNVSINLFNLSQDN 283
KK D + ++ +D+
Sbjct: 510 NKKGRHSDAYTHQNGDIEEDD 530
>At5g13660.1 68418.m01590 expressed protein
Length = 537
Score = 31.9 bits (69), Expect = 1.5
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 209 NIVYKVENPEAIQ-IISEILNAVLMKLFDLHKNIANGPVSH-DFNVNKIQQN-AEEELKK 265
N +Y EN + I ++ E+ N KLFD +N+ ++H +FN K + A EL++
Sbjct: 468 NHIY-FENGKTIYGVVQELKNTPQEKLFDAIQNVTGSDINHKNFNTWKASYHVARLELQR 526
Query: 266 YLSQDNVSI 274
+D+V++
Sbjct: 527 IYGKDDVTL 535
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 31.1 bits (67), Expect = 2.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 307 AFSKTILFNKYMQKTPEVNPITNALADYNLKMHPKQVNADQDLLKFGNDNNLPLISN 363
A S I + + +T +T+A+ + L + PK N + +LK G D N PL N
Sbjct: 543 ALSLKIAVSSFGNQTDSTEKVTSAMFPF-LLIQPKTWNLNLLVLKLGKDVNWPLFKN 598
>At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 500
Score = 31.1 bits (67), Expect = 2.6
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 247 SHDFNVNKIQQNAEEELKKYLSQDNVSINLFNLSQDN 283
+HD+++N I +++ E ++S D++ +NL+NL N
Sbjct: 219 AHDYHINSISNSSDGET--FISADDLRVNLWNLEISN 253
>At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 501
Score = 31.1 bits (67), Expect = 2.6
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 247 SHDFNVNKIQQNAEEELKKYLSQDNVSINLFNLSQDN 283
+HD+++N I +++ E ++S D++ +NL+NL N
Sbjct: 220 AHDYHINSISNSSDGET--FISADDLRVNLWNLEISN 254
>At5g04110.1 68418.m00397 DNA topoisomerase II family protein
siimilar to DNA topoisomerase II subunit B [Thermotoga
maritima] GI:1622792; contains Pfam profiles PF00204:
DNA topoisomerase II (N-terminal region), PF00249:
Myb-like DNA-binding domain
Length = 546
Score = 30.7 bits (66), Expect = 3.4
Identities = 17/83 (20%), Positives = 32/83 (38%)
Query: 213 KVENPEAIQIISEILNAVLMKLFDLHKNIANGPVSHDFNVNKIQQNAEEELKKYLSQDNV 272
++ NP +I+ + + LM+ F+LH ++ +S +N K + Y S+
Sbjct: 158 RLGNPNVREIVDQSVQECLMESFELHPDVFESIMSKSYNAYKTDLAVKRARDVYSSESVA 217
Query: 273 SINLFNLSQDNLTNKKDSLINIF 295
+ LTN F
Sbjct: 218 MVCAIESIPMKLTNSSSETSETF 240
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 30.3 bits (65), Expect = 4.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 235 FDLHKNIANGPVSHDF---NVNKIQQNAEEELKKYLSQDNVSINLFNLSQD 282
F H NI G SHD+ N+N+ +NA + +Y I+L L QD
Sbjct: 316 FSKHPNITPGTDSHDYVNSNLNRFNRNAAKNY-RYCCSPTKMIHLSTLPQD 365
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 29.9 bits (64), Expect = 5.9
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 80 LNTRITDNEPNSKIGCRDALKLMTEFKMSTELINHICQNELXXXXXXXIDSTKNINLMET 139
L +R+ D E S + LKL++ FKM TE +N D+ ++ +T
Sbjct: 333 LVSRLCDVENGSDVE-NLYLKLLSSFKMPTEFFTENLENPTEEEATDKTDTDGTTSVEDT 391
Query: 140 GFTQ-RGSVRKLPDEVVK 156
T + + LPD V++
Sbjct: 392 NSTDVKETTESLPDPVLR 409
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 29.9 bits (64), Expect = 5.9
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 80 LNTRITDNEPNSKIGCRDALKLMTEFKMSTELINHICQNELXXXXXXXIDSTKNINLMET 139
L +R+ D E S + LKL++ FKM TE +N D+ ++ +T
Sbjct: 333 LVSRLCDVENGSDVE-NLYLKLLSSFKMPTEFFTENLENPTEEEATDKTDTDGTTSVEDT 391
Query: 140 GFTQ-RGSVRKLPDEVVK 156
T + + LPD V++
Sbjct: 392 NSTDVKETTESLPDPVLR 409
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 29.9 bits (64), Expect = 5.9
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 151 PDE--VVKNIIISFYNFKPKAFNNLFDTNDNINSDNLKQLNDFIIQQSHVKSTSSIDQSG 208
PD+ V I + F +A +LF ND + N ++ D +++S ++ ID
Sbjct: 342 PDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIID--- 398
Query: 209 NIVYKVENPEAIQIISEILNAVLMKLFDLHKNIANGPVSHDFNVNKIQQNAEEELK 264
K +N + I+ LN ++ D K PV + K+ +EEELK
Sbjct: 399 --TRKAQN---LSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELK 449
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group
protein HMG2A {Gallus gallus}; contains Pfam profile
PF00505: HMG (high mobility group) box
Length = 446
Score = 29.9 bits (64), Expect = 5.9
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 26 LIVFRIALSKQNIENDKIDLILNDAQEMLRKLTTDKKYRFSSLQPIPKEGEFQ 78
L+ + L K IE +K + +L + E+LRK +++ + L+ + K EF+
Sbjct: 47 LMEMQAMLEKMKIEKEKTEDLLKEKDEILRKKEVEQEKLKTELKKLQKMKEFK 99
>At1g80620.1 68414.m09461 ribosomal protein S15 family protein
similar to ribosomal protein S15 GB:AAD36415 from
[Thermotoga maritima]
Length = 414
Score = 29.9 bits (64), Expect = 5.9
Identities = 19/117 (16%), Positives = 46/117 (39%)
Query: 540 DQPTNLYHDLVLVANVSDVSADLQKYSKEDXXXXXXXXXXXXXAKMIEENNIDNQLHVLQ 599
+QP+ D + + S + + L++ +D + +I L+ +
Sbjct: 41 EQPSQSSSDYKISSYFSGIRSSLKQTQSQDGKRQFVRFDAKPQNSLSGNQDIRRNLNEFR 100
Query: 600 KLMCNVEPKDILELHKQNILNGNGDNLKMQQSTSPSQNLNMNSLVSKAYYQQPLWNN 656
P+D+ +L KQN+L+ +G +++ + N+ + + + W N
Sbjct: 101 SRATAPPPRDMQDLFKQNVLSKSGGTRRIEGVPLTNIKANLRQMRPQQATTESKWAN 157
>At3g14300.1 68416.m01809 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 968
Score = 29.5 bits (63), Expect = 7.8
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 3 VGAPEKLLQIRNDNGTCTNIAAILIVFRIALSKQNIENDKIDLILNDAQEMLRKLT 58
VG P+KL + ND G + ++ VF +A+ N +D +++ ++ L T
Sbjct: 507 VGLPKKLAEETNDEGLKSALSVCADVFDLAVDSVNDTISSLDEVISGGKKNLNSST 562
>At2g34170.1 68415.m04182 expressed protein contains Pfam profile:
PF05097 protein of unknown function (DUF688)
Length = 523
Score = 29.5 bits (63), Expect = 7.8
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 359 PLISNKQNQPIGSLVFKNTPNTLTDKPVLEDFEQYLKVVNNLNKAQTIDKPVENVETKAI 418
PL+S ++ + V +N P LTD+ + +V ++ Q D P+E+ +
Sbjct: 11 PLLSTRRMKKSAISVRRNMPKQLTDESKTSESLSVSVLVQDMGLDQVPDSPLESKHVEEE 70
Query: 419 PNELQKNGAGNGILELLS 436
E + + + L+ LS
Sbjct: 71 AEESEDDDVFSDALDTLS 88
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,419,208
Number of Sequences: 28952
Number of extensions: 648800
Number of successful extensions: 1406
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 19
length of query: 693
length of database: 12,070,560
effective HSP length: 86
effective length of query: 607
effective length of database: 9,580,688
effective search space: 5815477616
effective search space used: 5815477616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 63 (29.5 bits)
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