Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000167-TA|BGIBMGA000167-PA|IPR004361|Glyoxalase I,
IPR004360|Glyoxalase/bleomycin resistance protein/dioxygenase
         (173 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   4.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   4.2  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 82  RTKWAMTRKATLELTYNWGTESDDSSYHNGNSDPR 116
           + K  +TRK+T   T+    ++ DS     NS+ +
Sbjct: 378 KDKREITRKSTSSSTHTSSQQTSDSFLSKRNSEKK 412


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 69 YENPA-EVPRDDDARTKWAMTRKATLELTYNW 99
          YE  A ++   D  R+K+ M  +  +E  ++W
Sbjct: 53 YEGRAVDITTSDRDRSKYGMLARLAVEAGFDW 84


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,333
Number of Sequences: 317
Number of extensions: 1916
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 173
length of database: 114,650
effective HSP length: 53
effective length of query: 120
effective length of database: 97,849
effective search space: 11741880
effective search space used: 11741880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)