Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000167-TA|BGIBMGA000167-PA|IPR004361|Glyoxalase I,
IPR004360|Glyoxalase/bleomycin resistance protein/dioxygenase
(173 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0361 - 12961101-12961201,12961683-12961772,12961910-129619... 211 3e-55
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 66 1e-11
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786... 66 2e-11
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536... 56 2e-08
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 35 0.031
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888 35 0.031
05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710 35 0.041
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 29 2.0
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 2.0
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 29 2.7
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 28 3.6
03_05_0625 - 26225201-26225879,26226706-26227553 28 4.7
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691... 27 8.2
07_01_0041 - 332393-333772 27 8.2
>05_03_0361 -
12961101-12961201,12961683-12961772,12961910-12961980,
12962079-12962158,12962264-12962324,12963620-12963681,
12963826-12963833,12964273-12964609,12964946-12965089,
12965235-12965339
Length = 352
Score = 211 bits (515), Expect = 3e-55
Identities = 95/160 (59%), Positives = 120/160 (75%), Gaps = 5/160 (3%)
Query: 14 CQTPDPTTKDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPA 73
CQ P T+ M+R+KDP+ ++ FY+ V+GM+LLK+L FP MKFSL+F+GYE+
Sbjct: 186 CQAPSAETEAGCL---MFRVKDPKVSLDFYSRVMGMSLLKRLDFPEMKFSLYFLGYEDVE 242
Query: 74 EVPRDDDARTKWAMTRKATLELTYNWGTESDDS--SYHNGNSDPRGFGHIGILVPDVDVA 131
P D RT W ++ATLELT+NWGTE+D YHNGNSDPRGFGHIG+ V DV A
Sbjct: 243 SAPTDPVKRTVWTFGQRATLELTHNWGTENDPEFKGYHNGNSDPRGFGHIGVTVHDVYKA 302
Query: 132 CARFEQLGVKFIKRPNDGKMKGLAFIQDPDGYWIEIFTSN 171
C RFE+LGV+F+K+P+DGKMKG+AFI+DPDGYWIEIF N
Sbjct: 303 CERFERLGVEFVKKPDDGKMKGIAFIKDPDGYWIEIFDLN 342
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 66.5 bits (155), Expect = 1e-11
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 30 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAMTR 89
+YR+ D +TI FYT LGM LL++ P K++ F+GY A
Sbjct: 88 VYRVGDIDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYG---------------AEDN 132
Query: 90 KATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDG 149
+ELTYN+G + D GFGH GI V DV G K + P G
Sbjct: 133 HFVVELTYNYGVDKYDIG--------AGFGHFGIAVDDVAKTVELIRAKGGKVTREP--G 182
Query: 150 KMKG----LAFIQDPDGYWIEI 167
+KG +AF++DPDGY EI
Sbjct: 183 PVKGGKTVIAFVEDPDGYKFEI 204
Score = 48.8 bits (111), Expect = 2e-06
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 28 QTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAM 87
Q M R+ + + I FY GM LL++ P K+++ MGY P D
Sbjct: 216 QVMLRVGNLDRAISFYEKACGMELLRKRDNPEYKYTVAMMGYG-----PED--------- 261
Query: 88 TRKATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPN 147
+ A LELTYN+G + Y GN+ + I I DV + G + ++ P
Sbjct: 262 -KNAVLELTYNYGV----TEYDKGNA----YAQIAIGTDDVYKTAEVVKLFGGQVVREPG 312
Query: 148 --DGKMKGLAFIQDPDGYWIEIFTSNV 172
G + I DPDG W +F N+
Sbjct: 313 PLPGINTKITSILDPDG-WKSVFVDNI 338
>05_03_0055 -
7863410-7863530,7864205-7864314,7864341-7864553,
7865342-7865406,7865511-7865635,7865936-7866164,
7866270-7866348
Length = 313
Score = 65.7 bits (153), Expect = 2e-11
Identities = 52/142 (36%), Positives = 69/142 (48%), Gaps = 29/142 (20%)
Query: 30 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAMTR 89
+YR+ D KTI FYT LGM LL++ P +++ F+GY P D
Sbjct: 92 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEERYTNAFLGYG-----PEDSHF-------- 138
Query: 90 KATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDG 149
+ELTYN+G ES Y G + FGH GI V DV + G + P G
Sbjct: 139 --VVELTYNYGVES----YDIGTA----FGHFGIAVEDVAKTVDLIKAKGGTVTREP--G 186
Query: 150 KMKG----LAFIQDPDGYWIEI 167
+KG +AFI+DPDGY E+
Sbjct: 187 PVKGGKSVIAFIEDPDGYKFEL 208
>08_01_0610 -
5367271-5367312,5367737-5367805,5368208-5368360,
5368441-5368548,5368689-5368736,5368868-5369083,
5369195-5369259,5369478-5369602,5369675-5369793
Length = 314
Score = 55.6 bits (128), Expect = 2e-08
Identities = 54/172 (31%), Positives = 76/172 (44%), Gaps = 31/172 (18%)
Query: 1 MAQGISPQEI-EALCQTPDPTTKDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPA 59
MA G ++ E + + P K + +YR+ D +TI YT GM LL++ P
Sbjct: 1 MASGSEAEKSPEVVLEWPKKDKKRLL--HAVYRVGDLDRTIKCYTECFGMKLLRKRDVPE 58
Query: 60 MKFSLFFMGYENPAEVPRDDDARTKWAMTRKATLELTYNWGTESDDSSYHNGNSDPRGFG 119
K++ F+G+ P D T +A LELTYN+G + D GFG
Sbjct: 59 EKYTNAFLGFG-----PED----TNFA------LELTYNYGVDKYDIG--------AGFG 95
Query: 120 HIGILVPDVDVACARFEQLGVKFIKRPNDGKMKG----LAFIQDPDGYWIEI 167
H I DV + + I R G +KG +AF QDPDGY E+
Sbjct: 96 HFAIATEDVYKLAEKIKSSCCCKITR-EPGPVKGGSTVIAFAQDPDGYMFEL 146
Score = 48.8 bits (111), Expect = 2e-06
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 29/146 (19%)
Query: 28 QTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAM 87
Q M R+ D ++I FY LGM LL++ P K+++ +GY D+D T
Sbjct: 158 QVMLRVGDLDRSIKFYEKALGMKLLRKKDVPDYKYTIAMLGY-------ADEDKTT---- 206
Query: 88 TRKATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFE----QLGVKFI 143
+ELTYN+G + Y GN+ + + I DV + E +LG K +
Sbjct: 207 ----VIELTYNYGV----TEYTKGNA----YAQVAIGTEDVYKSAEAVELVTKELGGKIL 254
Query: 144 KRPN--DGKMKGLAFIQDPDGYWIEI 167
++P G +A DPDG+ + I
Sbjct: 255 RQPGPLPGLNTKIASFLDPDGWKVHI 280
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 35.1 bits (77), Expect = 0.031
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 111 GNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRP---NDGKMKGLAFIQDPDGYWIEI 167
G+ DP HI D+ + R ++G++++KR +G F +DPDG+ IEI
Sbjct: 113 GDLDPMD-NHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDGFMIEI 171
>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
Length = 215
Score = 35.1 bits (77), Expect = 0.031
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 102 ESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKR--PNDGKMKGLAFIQD 159
E +S N +P+ HI ++ R +++GV++++R G F D
Sbjct: 74 EDPESMPPNKEINPKD-NHISFTCESMEAVQRRLKEMGVRYVQRRVEEGGVYVDQIFFHD 132
Query: 160 PDGYWIEIFT 169
PDG+ IEI T
Sbjct: 133 PDGFMIEICT 142
>05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710
Length = 92
Score = 34.7 bits (76), Expect = 0.041
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 89 RKATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPN- 147
+ A LELTYN+G + Y GN+ + I I DV Q G + + P
Sbjct: 8 KNAVLELTYNYGVK----EYDKGNA----YAQIAISTDDVYKTAEVIRQNGGQITREPGP 59
Query: 148 -DGKMKGLAFIQDPDGYWIEIFTSNV 172
G + DPDG W +F NV
Sbjct: 60 LPGINTKITACTDPDG-WKTVFVDNV 84
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 28 QTMYRIKDPRKTIPFYTGVLGM 49
++++RI P+ + +YTG+LGM
Sbjct: 118 ESLFRINHPKLPLSYYTGILGM 139
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 102 ESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKR--PNDGKMKGLAFIQD 159
E DS +P+ HI + R ++LG+ +I+R G F D
Sbjct: 75 EDPDSLPGKTEINPKD-NHISFQCESMVAVERRLKELGIPYIQRCVEEGGIYVDQIFFHD 133
Query: 160 PDGYWIEI 167
PDG+ IEI
Sbjct: 134 PDGFMIEI 141
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 28 QTMYRIKDPRKTIPFYTGVLGM 49
+T+++I P + +YTG+LGM
Sbjct: 33 ETLFKINHPELPLSYYTGILGM 54
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 28 QTMYRIKDPRKTIPFYTGVLGMT 50
+T+++I P + +YTGVLG+T
Sbjct: 130 ETLHKINHPDLPLSYYTGVLGVT 152
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 77 RDDDARTKWAMTRKATLELTYNWGTESDDSSYHNGN 112
+D D + ++ E+ + W ++ DD S H GN
Sbjct: 365 QDLDKKDSTTFRKEHDEEIDFEWSSDGDDDSDHRGN 400
>12_01_0760 +
6910325-6910558,6911305-6911455,6911949-6912115,
6912227-6912309,6912395-6912773
Length = 337
Score = 27.1 bits (57), Expect = 8.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 28 QTMYRIKDPRKTIPFYTGVLGM 49
+++++I P + +YTG+LGM
Sbjct: 109 ESLFKINHPELPLSYYTGILGM 130
>07_01_0041 - 332393-333772
Length = 459
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 109 HNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDGKMKGLAFIQDPDGYW 164
H+G+SD IG+L+ + VA A+ L V R D LA P G W
Sbjct: 270 HSGDSDAAKESKIGVLLFILHVALAKTSYLIVLDDIRAYDPWYTNLALPPPPHGEW 325
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,719,118
Number of Sequences: 37544
Number of extensions: 235780
Number of successful extensions: 373
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 19
length of query: 173
length of database: 14,793,348
effective HSP length: 77
effective length of query: 96
effective length of database: 11,902,460
effective search space: 1142636160
effective search space used: 1142636160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -