GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000167-TA|BGIBMGA000167-PA|IPR004361|Glyoxalase I,
IPR004360|Glyoxalase/bleomycin resistance protein/dioxygenase
         (173 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    27   5.5  

>AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical
           protein C17H12.4 protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 18  DPTTKDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEV 75
           +P  ++  +Q+ M   K P+K IP  TG    T  +  H PA K     +G+ENP EV
Sbjct: 317 EPLIQEIPYQEFM---KSPKK-IPMLTGC---TRYEMDHSPAPKPIGQALGFENPEEV 367


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 37  RKTIPFYTGVLGMTLLK-QLHFPAMKF-SLFFMGYENPAEVPRDDDARTKWAMT 88
           R T P     +GM  +K +  F  + F ++ F  +EN  EV   D  RTK  +T
Sbjct: 157 RNTEPTQADKIGMNQIKVEFEFDKIDFMTVHFKHFENDFEVADKDAKRTKQTVT 210


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 37  RKTIPFYTGVLGMTLLK-QLHFPAMKF-SLFFMGYENPAEVPRDDDARTKWAMT 88
           R T P     +GM  +K +  F  + F ++ F  +EN  EV   D  RTK  +T
Sbjct: 157 RNTEPTQADKIGMNQIKVEFEFDKIDFMTVHFKHFENDFEVADKDAKRTKQTVT 210


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,875,898
Number of Sequences: 27539
Number of extensions: 205199
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 12,573,161
effective HSP length: 77
effective length of query: 96
effective length of database: 10,452,658
effective search space: 1003455168
effective search space used: 1003455168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)