Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000166-TA|BGIBMGA000166-PA|IPR000618|Insect cuticle
protein
         (492 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          30   0.032
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.6  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    24   2.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   4.9  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    23   6.4  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    23   6.4  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    23   6.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 30.3 bits (65), Expect = 0.032
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 58  NDAPPAPRTPLVVTSRPLIESIAKSDLNPLPQNNTEAQPSSNGVSFVPFFGKVNEYRPFF 117
           N+APP P  P V +    + +++K  + PL ++    +    G+ FVP   K  E +  +
Sbjct: 728 NNAPPPPPPPRVESFAETVRTVSK--IPPLYKDLVAKRCEERGILFVPIPNKYYEAKQVY 785

Query: 118 GAG 120
             G
Sbjct: 786 RIG 788


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 43  LNLPVPTKQGPVLFPNDAPPAPRTPLVVTSRPLIESIAKSDLNPL 87
           +N+PVP  Q  ++ P     +P      TS         SDLN L
Sbjct: 405 VNVPVPPMQSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNML 449


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 3   LLLIILVGQSRCQEVTTPSSLLGPKHYNYHAFDAERYLKSLNL 45
           + L++    S C++     S+L     NY   D E  ++S +L
Sbjct: 303 IYLLVYACASTCEQANDTPSILHELRNNYFHMDLENNVQSYSL 345


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 185 YAFSYTVKDKDTGDDFSHSQHSRGAATNGEYRVRLPD 221
           + + + V +  T    SHS   R   T G + VR+P+
Sbjct: 163 FRYHFNVHNSGTHFWHSHSGFQRSDGTFGPFIVRVPE 199


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 43  LNLPVPTKQGPVLFPNDAPPAPRTPLVVTSRP 74
           L L +P + GP + PN     PR   ++ + P
Sbjct: 195 LELVIPPENGPKMTPNHLHIWPRGQFMMIALP 226


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 43  LNLPVPTKQGPVLFPNDAPPAPRTPLVVTSRP 74
           L L +P + GP + PN     PR   ++ + P
Sbjct: 195 LELVIPPENGPKMTPNHLHIWPRGQFMMIALP 226


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 43  LNLPVPTKQGPVLFPNDAPPAPRTPLVVTSRP 74
           L L +P + GP + PN     PR   ++ + P
Sbjct: 195 LELVIPPENGPKMTPNHLHIWPRGQFMMIALP 226


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,463
Number of Sequences: 317
Number of extensions: 7098
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 492
length of database: 114,650
effective HSP length: 59
effective length of query: 433
effective length of database: 95,947
effective search space: 41545051
effective search space used: 41545051
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)