GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000165-TA|BGIBMGA000165-PA|undefined
         (102 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   1.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   1.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   1.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   1.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   2.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   2.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    20   5.9  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    19   7.7  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
          transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 39 SRHKYGHPYGSPVSSSTPHNSNQI-LTVQNLTSDTPQYGT 77
          S + Y  PYG   S  TP +  ++    Q +  D P   T
Sbjct: 40 SNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINT 79



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 15  GNCAQHQISQTPSTKQPQSIL 35
           G   QH +    S  QPQ +L
Sbjct: 174 GRMRQHVMHNLSSVPQPQPVL 194


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
          protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 39 SRHKYGHPYGSPVSSSTPHNSNQI-LTVQNLTSDTPQYGT 77
          S + Y  PYG   S  TP +  ++    Q +  D P   T
Sbjct: 40 SNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINT 79



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 15  GNCAQHQISQTPSTKQPQSIL 35
           G   QH +    S  QPQ +L
Sbjct: 174 GRMRQHVMHNLSSVPQPQPVL 194


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
          protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 39 SRHKYGHPYGSPVSSSTPHNSNQI-LTVQNLTSDTPQYGT 77
          S + Y  PYG   S  TP +  ++    Q +  D P   T
Sbjct: 40 SNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINT 79



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 15  GNCAQHQISQTPSTKQPQSIL 35
           G   QH +    S  QPQ +L
Sbjct: 174 GRMRQHVMHNLSSVPQPQPVL 194


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 26  PSTKQPQSILKDPSRHKYGHPYGSPVSSSTPHNSNQILTVQNLTSDTPQYGT 77
           P+ +    I      H+YG+   SP+ SS   +S    T+ N   ++P Y T
Sbjct: 377 PTAESKADIKMYADMHQYGYNTLSPLPSSVHSHS----TIGNDYYNSPLYHT 424


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 4   VPPPDVTVLHPGNCAQHQISQTPSTKQ 30
           +PP      HP + + H    TP  KQ
Sbjct: 230 IPPHPGLSPHPPHLSSHPAIVTPGPKQ 256


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 4   VPPPDVTVLHPGNCAQHQISQTPSTKQ 30
           +PP      HP + + H    TP  KQ
Sbjct: 122 IPPHPGLSPHPPHLSSHPAIVTPGPKQ 148


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 62  ILTVQNLTSDTPQYGTIKKENKKQNVTIDESFNKRSE 98
           I+T   LT  +  +   ++  KK+N    E  NK  +
Sbjct: 122 IITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTDD 158


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock
          cognate 70 protein.
          Length = 196

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 75 YGTIKKENKKQNVTI 89
          YG  KK  K++NV I
Sbjct: 11 YGLDKKAEKERNVLI 25


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.123    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,235
Number of Sequences: 317
Number of extensions: 1359
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 114,650
effective HSP length: 48
effective length of query: 54
effective length of database: 99,434
effective search space:  5369436
effective search space used:  5369436
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)