GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000165-TA|BGIBMGA000165-PA|undefined
         (102 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   0.98 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   5.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 0.98
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 19  QHQISQTPSTKQPQSILKDPSRHKYGHPYGSPVSSST--PHNSN 60
           QH +   P  +Q  +  +   +H  G  Y SP+S+S+  P++ N
Sbjct: 106 QHVVYGNPQQQQLAAETQQQQQHNNG--YASPMSTSSYDPYSPN 147


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 54  STPHNSNQILTVQNLTSDTPQYGTIKKENKKQNVTIDESFNKRSETHV 101
           +T  ++N+I+T Q L         +  +N +    I ++    +ETH+
Sbjct: 412 TTEKDNNEIVTAQFLNQLKKSSVLVHTKNGRLKYQISDNDISTNETHI 459


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 39  SRHKYGHPYGSPVSSSTPHNSNQILTVQNLTSDT 72
           S H + H  G+P ++ T   +    T    T+ T
Sbjct: 643 STHSHPHEPGAPATTITTITTTTTTTTTTTTTTT 676


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 11 VLHPGNCAQHQISQTPSTKQ 30
          +LHP  C Q +++     K+
Sbjct: 15 LLHPSRCTQGKVNYREKEKE 34


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 11 VLHPGNCAQHQISQTPSTKQ 30
          +LHP  C Q +++     K+
Sbjct: 15 LLHPSRCTQGKVNYREKEKE 34


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.123    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,601
Number of Sequences: 429
Number of extensions: 1525
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 102
length of database: 140,377
effective HSP length: 49
effective length of query: 53
effective length of database: 119,356
effective search space:  6325868
effective search space used:  6325868
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)