Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000164-TA|BGIBMGA000164-PA|IPR003961|Fibronectin, type
III, IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type
III-like fold, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR013162|CD80-like,
immunoglobulin C2-set, IPR013098|Immunoglobulin I-set,
IPR013151|Immunoglobulin
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    33   0.12 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   3.5  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    28   4.6  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    28   6.1  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    28   6.1  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   6.1  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    27   8.1  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 9/212 (4%)

Query: 33   TTLAAGTVQKLACISTGGNPLATLTWFKNDKKIHSTTKTTDKAV---SAEISILTNVTDN 89
            T + + TV   +   T    + T T   +   ++S+T  T   V   S  I+  + +  +
Sbjct: 1486 TPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSS 1545

Query: 90   QAQYRCEATNSATEIPLFETVTLNVHFAPEAVKVRAEPDVLKPGIE-ATLICDSA---SS 145
                     NS+T I     V  +      +V   + P      +  +T I  S+   SS
Sbjct: 1546 TPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSS 1605

Query: 146  NPPATLSWWRDGIPVQNAPIFDDTT--SYNTVGIENEPLIISVRADGNPPSITYTWTKDG 203
             P  + +      P+ ++ + + +T  + +TV   + P+  S   + +PP  + T     
Sbjct: 1606 TPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSS 1665

Query: 204  LPITQSSYSSGNDRIISEGSMLNMTKLTRHDA 235
             PIT S+  + +  I S   + + T +T   A
Sbjct: 1666 TPITSSTVVNTSTPITSSTVVNSSTPITSSTA 1697


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 714 HRHKDMSGHSTLGRSAGKPNYVPAPSPMPPLDG 746
           HR +  S  S   R +  P+++  PS +PP DG
Sbjct: 345 HRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADG 377


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 396 VKLPVNTSTKYFAEFHKNDHITYTSVLLINN 426
           + +PVNT + YF  F   D  T T  +++ +
Sbjct: 38  LNIPVNTESDYFLSFKSPDESTLTDTIVVRH 68


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 218 IISEGSMLNMTKLTRHDAGIYTCEAVNSQGAAVANISVSVHYPAGI 263
           ++++G ++N+   T H + + +C   N   A +A  + +  YP G+
Sbjct: 339 LLADGRLVNLGCATGHPSFVMSCSFTNQVLAQIALWTDNTSYPLGV 384


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 736 PAPSPMPPLDGSYYNMSSDRYLSYPPLIGEYLQQQAGRTPTPPQQYGAQPLTKPHLMNGT 795
           P P P+P     Y N   ++YL+    I E  Q +  RT T  +   A P  +  L N T
Sbjct: 314 PEP-PVPFTSSEYRNTEEEQYLNLIRYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNT 372

Query: 796 V 796
           +
Sbjct: 373 L 373


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 528 FSVMAINKIGQSKYRPDDTKATTLTSSEVGELSTVSTEYVETPDISKPVIVYVSLTGAVL 587
           FSV++ +  G S+YR    +++ +      +   VS E + + DIS      +  +  V 
Sbjct: 847 FSVLSSDFPGSSRYRD---QSSPIRFYGKADSRPVSQEAILSQDISSSPSPVLPPSENVA 903

Query: 588 VLINVALIACFVWKRRLRRIKEQAGQASKSATIEMYAPSSYNDTMTGETLSSVSEKSETY 647
              + +L++      +LR   EQ    +     E       ++     +  SV E ++T 
Sbjct: 904 SYADDSLVSNLTMSPKLRDSMEQVPLENHR---EFEISDRVSELSFDSSTGSVLEIADTR 960

Query: 648 SQDDGDERHPPPIPEVPSIHNRHMLSQTTDAYLMED 683
              D  E+H P I    S  +     Q+T   L+ D
Sbjct: 961 RNQDAPEKHVPVIEIQSSRPSLEKTDQSTPVELLID 996


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 252 NISVSVHYPAGIKSVSQNVV-ANPNEDAVLSCT 283
           N  VS+H PA   SV +N + ANPN  ++   T
Sbjct: 53  NSFVSIHMPAPFSSVVRNALKANPNSVSIRDIT 85


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,000,715
Number of Sequences: 5004
Number of extensions: 173841
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 11
length of query: 838
length of database: 2,362,478
effective HSP length: 79
effective length of query: 759
effective length of database: 1,967,162
effective search space: 1493075958
effective search space used: 1493075958
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)