Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000164-TA|BGIBMGA000164-PA|IPR003961|Fibronectin, type
III, IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type
III-like fold, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR013162|CD80-like,
immunoglobulin C2-set, IPR013098|Immunoglobulin I-set,
IPR013151|Immunoglobulin
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.12
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 3.5
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 28 4.6
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 28 6.1
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 28 6.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 28 6.1
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 27 8.1
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.5 bits (73), Expect = 0.12
Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 9/212 (4%)
Query: 33 TTLAAGTVQKLACISTGGNPLATLTWFKNDKKIHSTTKTTDKAV---SAEISILTNVTDN 89
T + + TV + T + T T + ++S+T T V S I+ + + +
Sbjct: 1486 TPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSS 1545
Query: 90 QAQYRCEATNSATEIPLFETVTLNVHFAPEAVKVRAEPDVLKPGIE-ATLICDSA---SS 145
NS+T I V + +V + P + +T I S+ SS
Sbjct: 1546 TPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSS 1605
Query: 146 NPPATLSWWRDGIPVQNAPIFDDTT--SYNTVGIENEPLIISVRADGNPPSITYTWTKDG 203
P + + P+ ++ + + +T + +TV + P+ S + +PP + T
Sbjct: 1606 TPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSS 1665
Query: 204 LPITQSSYSSGNDRIISEGSMLNMTKLTRHDA 235
PIT S+ + + I S + + T +T A
Sbjct: 1666 TPITSSTVVNTSTPITSSTVVNSSTPITSSTA 1697
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 714 HRHKDMSGHSTLGRSAGKPNYVPAPSPMPPLDG 746
HR + S S R + P+++ PS +PP DG
Sbjct: 345 HRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADG 377
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 396 VKLPVNTSTKYFAEFHKNDHITYTSVLLINN 426
+ +PVNT + YF F D T T +++ +
Sbjct: 38 LNIPVNTESDYFLSFKSPDESTLTDTIVVRH 68
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 218 IISEGSMLNMTKLTRHDAGIYTCEAVNSQGAAVANISVSVHYPAGI 263
++++G ++N+ T H + + +C N A +A + + YP G+
Sbjct: 339 LLADGRLVNLGCATGHPSFVMSCSFTNQVLAQIALWTDNTSYPLGV 384
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 736 PAPSPMPPLDGSYYNMSSDRYLSYPPLIGEYLQQQAGRTPTPPQQYGAQPLTKPHLMNGT 795
P P P+P Y N ++YL+ I E Q + RT T + A P + L N T
Sbjct: 314 PEP-PVPFTSSEYRNTEEEQYLNLIRYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNT 372
Query: 796 V 796
+
Sbjct: 373 L 373
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.9 bits (59), Expect = 6.1
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Query: 528 FSVMAINKIGQSKYRPDDTKATTLTSSEVGELSTVSTEYVETPDISKPVIVYVSLTGAVL 587
FSV++ + G S+YR +++ + + VS E + + DIS + + V
Sbjct: 847 FSVLSSDFPGSSRYRD---QSSPIRFYGKADSRPVSQEAILSQDISSSPSPVLPPSENVA 903
Query: 588 VLINVALIACFVWKRRLRRIKEQAGQASKSATIEMYAPSSYNDTMTGETLSSVSEKSETY 647
+ +L++ +LR EQ + E ++ + SV E ++T
Sbjct: 904 SYADDSLVSNLTMSPKLRDSMEQVPLENHR---EFEISDRVSELSFDSSTGSVLEIADTR 960
Query: 648 SQDDGDERHPPPIPEVPSIHNRHMLSQTTDAYLMED 683
D E+H P I S + Q+T L+ D
Sbjct: 961 RNQDAPEKHVPVIEIQSSRPSLEKTDQSTPVELLID 996
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 252 NISVSVHYPAGIKSVSQNVV-ANPNEDAVLSCT 283
N VS+H PA SV +N + ANPN ++ T
Sbjct: 53 NSFVSIHMPAPFSSVVRNALKANPNSVSIRDIT 85
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,000,715
Number of Sequences: 5004
Number of extensions: 173841
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 11
length of query: 838
length of database: 2,362,478
effective HSP length: 79
effective length of query: 759
effective length of database: 1,967,162
effective search space: 1493075958
effective search space used: 1493075958
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -