Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000163-TA|BGIBMGA000163-PA|IPR007110|Immunoglobulin-like
         (143 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0049 + 417325-419068,419667-420307                               27   7.7  
03_03_0252 - 15857907-15858246,15858340-15858608                       27   7.7  

>12_01_0049 + 417325-419068,419667-420307
          Length = 794

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 1   MSENVLSFTADASDNKARYSCEAKNIMISNTLKAEI--DLTVLFAPA----HVTISGPSE 54
           +S N L+    AS +    + +A N+  +N L  ++   L   F P+    ++ + G S 
Sbjct: 308 LSGNALTGEIPASLSNLTTTLQAFNVS-NNNLSGQVPASLAQKFGPSAFAGNIQLCGYS- 365

Query: 55  ARVGDPVPLTCSTAPSNPAAEIKWL-VIGKHHK 86
             V  P P + S APS PA+ ++ +   G+H K
Sbjct: 366 --VSVPCPASPSPAPSAPASPVQGVETTGRHRK 396


>03_03_0252 - 15857907-15858246,15858340-15858608
          Length = 202

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 10  ADASDNKARYSCEAKNIMISNTLKAE-IDLTVLFAPAHVTISGPSEARVGDPVPLTCSTA 68
           A A++ K +   +A+ + +  T  A+ + ++   APA        E  V   VP T  TA
Sbjct: 47  AAAAEAKEKMVVDARTMQLFPTRSADGVVVSPAPAPAAAQERRRPEVHVTPSVPATAPTA 106

Query: 69  PSNPAAEIKWLVIGKHHKEASNRTVISPE---------GGWITSSNITVIVEP 112
           P       + LV   +  EA+ + V   +         GG   ++N+TV+  P
Sbjct: 107 PLTIVYGGQVLVFEHYTAEAAEKLVQRTQHLLAAAAGGGGGNKNNNVTVVTPP 159


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,042,211
Number of Sequences: 37544
Number of extensions: 157924
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 2
length of query: 143
length of database: 14,793,348
effective HSP length: 75
effective length of query: 68
effective length of database: 11,977,548
effective search space: 814473264
effective search space used: 814473264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 56 (26.6 bits)