Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000163-TA|BGIBMGA000163-PA|IPR007110|Immunoglobulin-like
(143 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64105.1 68414.m07262 no apical meristem (NAM) family protein... 31 0.40
At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein ... 30 0.70
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr... 27 4.9
At3g22890.1 68416.m02885 sulfate adenylyltransferase 1 / ATP-sul... 27 4.9
At1g03470.1 68414.m00328 kinase interacting family protein simil... 27 4.9
At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) fa... 27 6.5
At5g13650.1 68418.m01584 elongation factor family protein contai... 26 8.6
At3g61340.1 68416.m06864 F-box family protein contains F-box dom... 26 8.6
>At1g64105.1 68414.m07262 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 161
Score = 30.7 bits (66), Expect = 0.40
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 27 MISNTLKAEIDLTVLFAPAHVTISGPSEARVGDPVPLTCSTAPS-NPAAEIKWLVIGKHH 85
+I N L+ +I+ P +V + E +P L TAP NP +W GK +
Sbjct: 15 IIENYLRPKINGETSSIPRYV-VELAEELYTVEPWLLPRQTAPILNPG---EWFYFGKRN 70
Query: 86 KEASNRTVISPEGGWITSSNITVIV 110
++ SN + EG WI ++
Sbjct: 71 RKYSNLEGVHCEGSWILEDGCIAVL 95
>At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein
(FLA6) identical to gi|13377780_gb_AAK20859
Length = 247
Score = 29.9 bits (64), Expect = 0.70
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 6 LSFTADASDNKARYSCEAKNIMISNTLKAEIDLTVLFAPAHV---TISGPSEARVGDPVP 62
L+FT A N+ S I+N L+ + L V + + + G G P P
Sbjct: 141 LNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFGTKTTPTGAPAP 200
Query: 63 --LTCSTAPSNPAAEIKWLVIGKHHKEASNRTVIS 95
T S+ +PAA+ + G K S V+S
Sbjct: 201 KSSTSSSDADSPAADDEHKSAGSSVKRTSLGIVVS 235
>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
protein / kinesin motor family protein kinesin,
Syncephalastrum racemosum, AJ225894
Length = 941
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 2 SENVLSFTADASDNKARYSCEAKNIMISNTLKAEIDLTVLFAPAHVTISGPSEARVGDPV 61
S + +S ++ + + AR S A I S+ LK + + + V+ S PS R G PV
Sbjct: 29 SNHAVSLSSSSLNLPARTSIVAPGIAHSSRLKDRPSASSSSSSSSVSASSPSTRRSGTPV 88
>At3g22890.1 68416.m02885 sulfate adenylyltransferase 1 /
ATP-sulfurylase 1 (APS1) nearly identical to ATP
sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
Length = 463
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 30 NTLKAEIDLTV-LFAPAHVTISGPSEARVGDPVPLTCSTAPSNPAAEIKWLVIGKHHKE 87
N+L+ + V + P + I +AR+G+ + + NP A + + I KH KE
Sbjct: 118 NSLRLDDGSVVNMSVPIVLAIDDEQKARIGESTRVALFNSDGNPVAILSDIEIYKHPKE 176
>At1g03470.1 68414.m00328 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 269
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 70 SNPAAEIKWLVIGKHHKEASNRTVISPEGGWITSSNITVIVEPNRRSIVVVCHG 123
S+ E W + H+E + + + E W+ S I IVE S VV G
Sbjct: 101 SSTCDESSWSEACETHEEYAESEIDNGESKWVDESEIDGIVEEIEPSEVVYSEG 154
>At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 386
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 85 HKEASNRTVISPEGGWITSSNITVIVEPNRRSI 117
+K S T+ S E G S + +V++EP RRS+
Sbjct: 282 NKLTSMTTMFSSENGDSGSKSRSVMIEPGRRSV 314
>At5g13650.1 68418.m01584 elongation factor family protein
contains Pfam profiles: PF00009 elongation factor Tu
GTP binding domain,PF00679 elongation factor G
C-terminus, PF03144 elongation factor Tu domain 2
Length = 675
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 60 PVPLTCSTAPSN--PAAEIK 77
P P+TCS +PS PA+E+K
Sbjct: 53 PRPITCSASPSTAEPASEVK 72
>At3g61340.1 68416.m06864 F-box family protein contains F-box domain
Pfam:PF00646
Length = 410
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 39 TVLFAPAHVTISGPSEARVGDPVPLTCSTAPSNPAAEIKWLVIGKHHKEASNRTVISP 96
T F+ H P A + P++C PSN ++ + G H + TV P
Sbjct: 83 TFFFSSPHPQDLSPIAANLHMSFPISC---PSNICRPVRGWLCGLHQRTTKGTTVTEP 137
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.127 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,624
Number of Sequences: 28952
Number of extensions: 121080
Number of successful extensions: 297
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 8
length of query: 143
length of database: 12,070,560
effective HSP length: 74
effective length of query: 69
effective length of database: 9,928,112
effective search space: 685039728
effective search space used: 685039728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 55 (26.2 bits)
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