GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000163-TA|BGIBMGA000163-PA|IPR007110|Immunoglobulin-like
         (143 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    39   2e-05
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 39.1 bits (87), Expect = 2e-05
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 2   SENVLSFTADASDNKARYSCEAKNIMISNTLKAEIDLTVLFAPAHVTISGPSE-ARVGDP 60
           +E VL   +   ++K  Y C  +N   S    AE+ L   F P  +  +   E  + G+ 
Sbjct: 371 NEAVLRIESVRKEDKGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEETVQPGNS 430

Query: 61  VPLTCSTAPSNPAAEIKWLVIGKHHKEASNRTV---ISPEGGWITSSNITVI 109
           V L C  A  NP  EI W + G+    +    +   ++  G  ++  NIT I
Sbjct: 431 VFLKC-IASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAI 481


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
          castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 43 APAHVTISGPSEARVGDPVPLTCSTA 68
          +P+   IS PS  + G P  LT + A
Sbjct: 66 SPSSPRISSPSSTKSGSPGFLTYTKA 91


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,463
Number of Sequences: 317
Number of extensions: 1185
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 143
length of database: 114,650
effective HSP length: 51
effective length of query: 92
effective length of database: 98,483
effective search space:  9060436
effective search space used:  9060436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)