GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000163-TA|BGIBMGA000163-PA|IPR007110|Immunoglobulin-like
         (143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    28   0.48 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   0.48 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.5  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   1.9  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   3.4  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   4.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   5.9  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   7.8  

>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 3   ENVLSFTADASDNKARYSCEAKNIMISNTLKAEIDLTVLFAPAHVTISGPSEARVGDPVP 62
           EN+LS     S  K  +   +K IM    L  ++ L  L+ PAH T    +  R+   V 
Sbjct: 496 ENMLSLVNKNSCIKRLHLKLSKGIMDIKVLTHQLMLYDLYPPAHQTYLWKALERL---VN 552

Query: 63  LTCSTAPSNPAAEIKWLVIGKHHKEASNRTVISPEGGWITSSNITVIVEPNRRSIVVVCH 122
              S     P            HK A+ + +       I SS+I V+ E N R + +VC 
Sbjct: 553 EKVSLGELTPV-----------HKVAAEKRIGDIRMHLIESSDIYVVTE-NHRWLHIVCE 600

Query: 123 GINAQL 128
           G N  L
Sbjct: 601 GFNCFL 606


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 65  CSTAPSNPAAEIKWLVIGKHHKEASNRTVISPEGGWITSSN-ITVIVEPNRRSIVVVCHG 123
           CS +  N  A  K LV G  H    N TVI+     + S + I+ I    +  +V+    
Sbjct: 123 CSRSDLNVEASAKGLVFGSIHIALENGTVITATKPLLISHHRISSITSTAKWVLVIEKEA 182

Query: 124 INAQLTENVIA 134
           +   LTE  +A
Sbjct: 183 VFQTLTEEALA 193


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 72   PAAEIKWLVIGKHHKEASNRTVISPEGGWITSSNITVIVEPNRRSI 117
            PA+ I   V G       + T+ +PE G  T  N+  + + NR +I
Sbjct: 1016 PASSIPQHVSGNRKGRLRSNTISTPEFGSFTYRNLDFLNKANRNTI 1061


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 29  SNTLKAEIDLTVLFAPAHVTISGPSEARVGDPVPLTCSTAPSN--PAAEIKWLVIGKHHK 86
           S T+K+E +  V       T S PS +  G PV      A S+  P AE K   +     
Sbjct: 277 SETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPEPVPASAA 336

Query: 87  EASNRTVISPEGGWITSSNITVIVEPNRR 115
           E +  +  +     I +S   VI EP  R
Sbjct: 337 ERAPTSESTTVPETIVASTTKVISEPAPR 365


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 26  IMISNTLKAEIDLTVLFAPAHVTISGPSEARVGDPVPLTCSTAPSNPAAEIKWLV 80
           I + N ++     TV+F+ +       +      P+P +C   P+NP  + K+ +
Sbjct: 110 ITLLNVMREHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAI 164


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 18  RYSCEAKNIMISNTLKAEIDLTVLFAPAHVTISGPSEARVGDPVP 62
           RY    +N +  +TL   +    +  P H+TI    +   GD  P
Sbjct: 210 RYGLTGRNGIGKSTLLRALSRREIAIPTHITILHVEQEMTGDDTP 254


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 85  HKEASNRTVISPEGGWITSSNITVIVEPNRRSIVVV 120
           H +     +I P   W      TV+++PNR S V+V
Sbjct: 571 HIDLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLV 606


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 43  APAHVTISGPSEARVGDPVPLTC 65
           +P+++T S PS+  V + V LTC
Sbjct: 111 SPSYLTDSSPSDLSVENKVLLTC 133


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,634
Number of Sequences: 5004
Number of extensions: 23189
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 8
length of query: 143
length of database: 2,362,478
effective HSP length: 67
effective length of query: 76
effective length of database: 2,027,210
effective search space: 154067960
effective search space used: 154067960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 50 (24.2 bits)