GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000162-TA|BGIBMGA000162-PA|IPR013162|CD80-like,
immunoglobulin C2-set, IPR007110|Immunoglobulin-like
         (78 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.093
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.093
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   0.66 
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    20   3.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    19   4.6  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    19   6.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    19   6.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    19   6.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    19   6.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    19   6.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    19   6.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    19   6.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           19   6.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    19   6.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    19   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   8.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.0 bits (52), Expect = 0.093
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 7   YISTPISKSIKFEK--IAPPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAKIVWY 64
           + STPI     +    + PP S  + +  P S+ E K+ E     C   N KP       
Sbjct: 90  FYSTPIVPHFAYNHNPLTPPNSEPLVS--PKSEKEEKDMETTLTPCASPNRKPDDNQDHL 147

Query: 65  RGNVELKGDKGRLF 78
           R  +E+  +K  LF
Sbjct: 148 R-RLEMSLEKSGLF 160


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.093
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 40  VKEGEDVSLECFVKNAKPPAKIVW 63
           + EG+ VS++C V     P  I W
Sbjct: 615 INEGDGVSVQCTVSKGDYPLNISW 638



 Score = 21.0 bits (42), Expect = 1.5
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 44   EDVSLECFVKNAKPPAKIVW 63
            EDV+L C      PP  I W
Sbjct: 1322 EDVTLPCLAVGLPPPV-ITW 1340


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 0.66
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 10 TPISKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPP 58
          TP+  S     I P  ++E    P N         D  L+  V    PP
Sbjct: 17 TPLKSSFSISSILPETALEAPKSPENHPETELSDSDCDLD--VTGTPPP 63


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
          peptide receptor 1 protein.
          Length = 374

 Score = 19.8 bits (39), Expect = 3.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 61 IVWYRGNVELK 71
          + WY GNV  K
Sbjct: 88 VAWYAGNVACK 98


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 19.4 bits (38), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 25  KSVEITNHPPNSKLEVKEGEDVSLECFVKNA 55
           K+ EIT   P +K  ++EG  V   C + +A
Sbjct: 178 KNWEITMAVPIAKFRLQEGYHVPELCELLDA 208


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 61  IVWYRGNVELK 71
           + WY GNV  K
Sbjct: 110 VAWYAGNVLCK 120


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 77  APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 112


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 22  APPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
           APP+S    + P NS      G    L     +  PP K
Sbjct: 121 APPRSTPPLSTPSNSNATKSSGLTSPLSV---STSPPGK 156


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 50  CFVKNAKPPA 59
           CF K++K PA
Sbjct: 154 CFFKSSKKPA 163


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 50  CFVKNAKPPA 59
           CF K++K PA
Sbjct: 154 CFFKSSKKPA 163


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 50  CFVKNAKPPA 59
           CF K++K PA
Sbjct: 154 CFFKSSKKPA 163


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 50  CFVKNAKPPA 59
           CF K++K PA
Sbjct: 154 CFFKSSKKPA 163


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,036
Number of Sequences: 317
Number of extensions: 660
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 78
length of database: 114,650
effective HSP length: 46
effective length of query: 32
effective length of database: 100,068
effective search space:  3202176
effective search space used:  3202176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.2 bits)
S2: 36 (18.6 bits)