Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000162-TA|BGIBMGA000162-PA|IPR013162|CD80-like,
immunoglobulin C2-set, IPR007110|Immunoglobulin-like
(78 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 27 1.4
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 27 1.9
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 26 3.3
09_01_0070 - 1017662-1018057 26 4.4
03_06_0723 + 35755407-35755457,35755653-35756321 26 4.4
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344... 25 5.8
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 25 5.8
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 25 7.7
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869 25 7.7
03_06_0754 - 36025579-36027000 25 7.7
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 8 ISTPISKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDV 46
IS K++K + PK V+ + P N K + E +DV
Sbjct: 219 ISNLKKKTLKKRSVDAPKDVDFISDPSNLKKKTSEKDDV 257
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 10 TPISKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPP 58
T + ++F APPK V+ T++ L ++ D S + + +A PP
Sbjct: 293 TDLRNHLRFTLKAPPKIVDTTSNTTEWDLLDEDDVDASSQIPLDDASPP 341
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 15 SIKFEKIAPPKSVEITNHPPNSK 37
S + +K+A PKS +T+ P NSK
Sbjct: 918 SERLKKLAEPKSNALTDRPSNSK 940
>09_01_0070 - 1017662-1018057
Length = 131
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 22 APPKSVEITNHPPNSKLEVKEGEDVSLE 49
APP +V+I HP L +E ED S E
Sbjct: 87 APPVTVQILPHPAEDYLSDEELEDDSQE 114
>03_06_0723 + 35755407-35755457,35755653-35756321
Length = 239
Score = 25.8 bits (54), Expect = 4.4
Identities = 7/20 (35%), Positives = 17/20 (85%)
Query: 7 YISTPISKSIKFEKIAPPKS 26
+++TP++++IKF + PP++
Sbjct: 177 WLATPLTRTIKFADVRPPET 196
>07_01_0454 +
3443871-3444024,3444268-3444356,3445482-3445557,
3445875-3445880,3445984-3446131,3446237-3446394,
3446473-3446676,3446803-3447038,3447227-3447439,
3447984-3448082,3448262-3448371,3448581-3448655,
3449407-3449485,3449563-3449709,3449785-3449865,
3449975-3450094,3450580-3450702,3451382-3451459,
3451586-3451674,3451760-3451868,3452117-3452227,
3452557-3452612,3452697-3452874,3452971-3453072,
3453160-3453231,3453350-3453415,3453502-3453567,
3453676-3453759,3454638-3454754,3455753-3455827,
3455912-3455995,3456138-3456179
Length = 1148
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 24 PKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKP 57
PK ++ + ++E+ E ED + CF K+ KP
Sbjct: 780 PKLRKMAGFSQDEEIELYELEDGDIVCFQKSPKP 813
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 7 YISTPISKSIKFEKIAPPKSVEITNHPPNSKLEVKEG--EDVSLECFVKNAK 56
++ T +K ++F I PP++VEI P+S EG + +E VK+A+
Sbjct: 449 HLLTEYAKLLRFRPIKPPEAVEIC---PDSLACQAEGLEKKFLMESMVKSAR 497
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 12 ISKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAK 60
+ K+ + P K + T P S+ +K +V + F++NA+PPA+
Sbjct: 153 LCKASHMSEPPPLKKTKKTPLPNRSEPSLKVPVEVQ-DHFIRNARPPAR 200
>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
Length = 526
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 8 ISTPISKSIKFEKIAPPKSVEITNHPPNS 36
++ P+ IAPP S T HPP S
Sbjct: 345 LAVPLGSLKTRRAIAPPPSPPATTHPPPS 373
>03_06_0754 - 36025579-36027000
Length = 473
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 9 STPISKSIKFEKIAPPKSVEITNHPPNSK----LEVKEGEDVSLE 49
+TP+ +S+ P SV++ PP S+ +++ GE + LE
Sbjct: 252 TTPLHRSLTLSSAVHPSSVDVQVQPPVSRKSMSMDMGMGEALYLE 296
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,353
Number of Sequences: 37544
Number of extensions: 86548
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 10
length of query: 78
length of database: 14,793,348
effective HSP length: 57
effective length of query: 21
effective length of database: 12,653,340
effective search space: 265720140
effective search space used: 265720140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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