GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000162-TA|BGIBMGA000162-PA|IPR013162|CD80-like,
immunoglobulin C2-set, IPR007110|Immunoglobulin-like
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.012
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              28   0.012
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.082
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.082
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.11 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.11 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   1.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    20   3.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.012
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 36  SKLEVKEGEDVSLECFVKNAKPPAKIVWYRGNVELKGDKGRL 77
           +KL +  GE  +L+C V     P  I W     E+ G  G L
Sbjct: 591 TKLPMNAGEFANLQCIVPTGDLPLNIRWSYPGEEMGGSSGVL 632



 Score = 20.6 bits (41), Expect = 2.3
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 17   KFEKIAPPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAKIVW-YRGNVELKGDKG 75
            K   +AP   V       + K      EDV L C      P  ++ W  RG V    D+ 
Sbjct: 1265 KIVALAPSVRVPAKIASFDDKFTATYKEDVKLPCLAVGV-PAPEVTWKVRGAVLQSSDRL 1323

Query: 76   R 76
            R
Sbjct: 1324 R 1324


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 0.012
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 13  SKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAKIVWYRGNVELK 71
           SK      ++  KS+E+ NH     +  + G++V ++C V    PP  +VW R   +L+
Sbjct: 301 SKLYSVSVVSLDKSLEV-NH-----ISARVGDNVEIKCDV-TGTPPPPLVWRRNGADLE 352



 Score = 26.6 bits (56), Expect = 0.035
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 33  PPNSKLEVKEGEDVSLECFVKNAKPPAKIVWY 64
           P N  L V  GE  ++ C +   + P  +VW+
Sbjct: 862 PSNDALFVLNGETRTINCEIGGLQHPGAVVWF 893


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.082
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 34  PNSKLEVKEGEDVSLECFVKNAKPPAKIVWYR-GNVEL 70
           P+  + VK+G+  +L C V +   P  + W + G +EL
Sbjct: 813 PSRLVTVKKGDTATLHCEV-HGDTPVTVTWLKGGKIEL 849



 Score = 23.4 bits (48), Expect = 0.33
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 37  KLEVKEGEDVSLECFVKNAKPPAKIVWYRGNVELKGD 73
           K+    GE + L+C V    P  +I W R N EL  D
Sbjct: 527 KVTAVAGETLRLKCPVAGY-PIEEIKWERANRELPDD 562



 Score = 19.0 bits (37), Expect = 7.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 40   VKEGEDVSLECFVKNAKPPAKIVWYRGNV 68
            V EG+   +   V   + PA+I  + G+V
Sbjct: 1295 VGEGQSSKVAAQVPTNRVPARITSFGGHV 1323



 Score = 18.6 bits (36), Expect = 9.4
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 40  VKEGEDVSLECFVKNAKPPAKIVWYR 65
           + EG      C V    PP  I W +
Sbjct: 622 LSEGMRTRTVCGVAAGDPPLTISWLK 647


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.082
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 34  PNSKLEVKEGEDVSLECFVKNAKPPAKIVWYR-GNVEL 70
           P+  + VK+G+  +L C V +   P  + W + G +EL
Sbjct: 809 PSRLVTVKKGDTATLHCEV-HGDTPVTVTWLKGGKIEL 845



 Score = 23.4 bits (48), Expect = 0.33
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 37  KLEVKEGEDVSLECFVKNAKPPAKIVWYRGNVELKGD 73
           K+    GE + L+C V    P  +I W R N EL  D
Sbjct: 527 KVTAVAGETLRLKCPVAGY-PIEEIKWERANRELPDD 562



 Score = 20.2 bits (40), Expect = 3.1
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 21  IAPPKSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAKIVWYR 65
           I PPK    T     +  ++  GE  +L C V     P  I W +
Sbjct: 608 IVPPKISPFT-----ADRDLHLGERTTLTCSVTRGDLPLSISWLK 647



 Score = 19.0 bits (37), Expect = 7.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 40   VKEGEDVSLECFVKNAKPPAKIVWYRGNV 68
            V EG+   +   V   + PA+I  + G+V
Sbjct: 1291 VGEGQSSKVAAQVPTNRVPARITSFGGHV 1319


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 0.11
 Identities = 12/65 (18%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 6  EYISTPISKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDVS--LECFVKNAKPPAKIVW 63
          ++++  ++ +I    +AP + V++     +   ++ E +     ++CFV+  K    + +
Sbjct: 13 DFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSY 72

Query: 64 YRGNV 68
          +RGN+
Sbjct: 73 WRGNL 77


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 0.11
 Identities = 12/65 (18%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 6  EYISTPISKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDVS--LECFVKNAKPPAKIVW 63
          ++++  ++ +I    +AP + V++     +   ++ E +     ++CFV+  K    + +
Sbjct: 13 DFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSY 72

Query: 64 YRGNV 68
          +RGN+
Sbjct: 73 WRGNL 77


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 37 KLEVKEGEDVSLECFVKNAKPPAKIV-WYRGNV 68
          +L+ K G+ V L+C + N     K++ W   N+
Sbjct: 50 ELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNL 82


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 8   ISTPISKSIKFEKIAPPK 25
           I   I   + F+KI PPK
Sbjct: 236 IDNEIFNRVPFDKIFPPK 253


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 383

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 49 ECFVKNAK 56
          +CF KNAK
Sbjct: 91 DCFFKNAK 98


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,956
Number of Sequences: 429
Number of extensions: 797
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.2 bits)
S2: 36 (18.6 bits)