GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000162-TA|BGIBMGA000162-PA|IPR013162|CD80-like,
immunoglobulin C2-set, IPR007110|Immunoglobulin-like
         (78 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02400.1 68416.m00227 forkhead-associated domain-containing p...    27   1.2  
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa...    27   2.1  
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa...    26   2.7  
At1g67580.1 68414.m07699 protein kinase family protein contains ...    25   6.4  
At5g38140.1 68418.m04596 histone-like transcription factor (CBF/...    25   8.4  
At3g47300.1 68416.m05141 selenoprotein-related contains weak sim...    25   8.4  

>At3g02400.1 68416.m00227 forkhead-associated domain-containing
           protein / FHA domain-containing protein / AT hook
           motif-containing protein contains Pfam profiles PF00498:
           FHA domain, PF02178: AT hook motif
          Length = 585

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 12  ISKSIKFEKIAPPKSVEITNHPPNSKLEVKEGEDVSLECF 51
           + KSIK E    PK+VEI+     S+  V   + +  ECF
Sbjct: 253 VQKSIKLEVEDTPKAVEISE--VKSRKRVTRSKQIENECF 290


>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
           SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 27  VEITNHPPNSKLEVKEGEDVSL-----------ECFVKNAKPPAKIVWYRGNVELKGDK 74
           VE  N    + L++K+G +V+L           E F+K   P A +  + G ++LKG+K
Sbjct: 193 VETMNLDGETNLKLKQGLEVTLSLREELNFRDFEAFIKCEDPNANLYSFVGTMDLKGEK 251


>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1)  from {Mus
           musculus} SP|P98200, {Bos taurus} SP|Q29449, {Homo
           sapiens} SP|O43520; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1200

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 27  VEITNHPPNSKLEVKEGEDVS-----------LECFVKNAKPPAKIVWYRGNVELKGDK 74
           VE  N    + L+VK+G +V+            E FVK   P A +  + G +ELKG K
Sbjct: 193 VETMNLDGETNLKVKQGLEVTSSLRDEFNFKGFEAFVKCEDPNANLYSFVGTMELKGAK 251


>At1g67580.1 68414.m07699 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 752

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 25  KSVEITNHPPNSKLEVKEGEDVSLECFVKNAKPPAKIVWYRGNVEL 70
           K VE+T  PP   L  +  +  S+ C   +   PAK   ++  VE+
Sbjct: 171 KPVEVTPLPPPPPLVKRSSQSPSVSCGGNSHYSPAKSDMHQDPVEV 216


>At5g38140.1 68418.m04596 histone-like transcription factor
          (CBF/NF-Y) family protein similar to CCAAT-binding
          transcription factor subunit AAB-1 (GI:2583171)
          [Neurospora crassa];  contains a CBF/NF-Y subunit
          signature (PDOC00578) presernt in members of
          histone-like transcription factor family; contains Pfam
          PF00808 : Histone-like transcription factor (CBF/NF-Y)
          and archaeal histone
          Length = 195

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 11 PISKSIKFEKIAPPKSVEI-------TNHPPNSKLEVKEGEDVSLECFVKNAK 56
          P S  ++ E +AP     +       +NHP  SK+E     D +L+ F  N +
Sbjct: 4  PKSSHVRMEPVAPRSHNTMPMLDQFRSNHPETSKIEGVSSLDTALKVFWNNQR 56


>At3g47300.1 68416.m05141 selenoprotein-related contains weak
          similarity to selenoprotein W (Swiss-Prot:P49904)
          [Rattus norvegicus]
          Length = 209

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 4  SCEYISTPISKSIKFEKIAPPKSVEITNHP 33
          SC Y  T +S     E + P   V + N+P
Sbjct: 66 SCSYKGTAVSMKKMLESVFPGLDVVLANYP 95


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,241
Number of Sequences: 28952
Number of extensions: 78719
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 12,070,560
effective HSP length: 57
effective length of query: 21
effective length of database: 10,420,296
effective search space: 218826216
effective search space used: 218826216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)