GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000161-TA|BGIBMGA000161-PA|undefined
         (108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    26   1.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   3.4  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.0  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    24   6.0  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   8.0  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    23   8.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    23   8.0  

>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 85  PQRGDQNEMRESFPMTPKGTYA 106
           P       +RESFP TP GT A
Sbjct: 240 PNEYSMEYLRESFPQTPMGTEA 261


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 11  EHHGKDFIPETEVVGKGVWRVAIIQRKIIDRCLNLAYDIF 50
           + HG  FI +         R A+ Q      CL L  DIF
Sbjct: 407 DQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIF 446


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/19 (42%), Positives = 16/19 (84%)

Query: 45  LAYDIFKIKRIYTSSEQQH 63
           + Y +FKI R+YTS+++++
Sbjct: 240 IPYILFKIIRMYTSTQKEY 258


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 13  HGKDFIPETEVVGKGVWRVAIIQRKIID-RCLNLAYDIFKIKRIYTSSEQQHSDLRSIEQ 71
           H K F  E   +  G + V   +    + RC     ++ K+K + TS EQ   D +  E 
Sbjct: 68  HEKGFPKEALDLFLGAYNVITPELAHFEARCKESNVEMPKLKPVPTSWEQALQDNKPEEY 127

Query: 72  YH 73
           YH
Sbjct: 128 YH 129


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 83  RKPQRGDQNEMRESF-PMTPKGTY 105
           RKP+R D N  R++F P     TY
Sbjct: 113 RKPKRDDYNNNRKNFYPPIQNSTY 136


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 33  IIQRKIIDRCLNLAYDIFK--IKRIYTSSEQQHSDLRSIEQYHPLGGRSSLCRKPQRGDQ 90
           II    I+ CL    D+F+  +  +Y  +    SD    E    LG R  +  +  +   
Sbjct: 68  IIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAE-LEKLGIRYRIALRIAK--- 123

Query: 91  NEMRESFPMTPKGTYA 106
           +E  E  P T KGTYA
Sbjct: 124 DERFERLPCTHKGTYA 139


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 47  YDIFKIKRIYTSSEQQHSDLRSIEQY-HPLGGRSSLCRKPQRGDQNEMR 94
           + +F  ++IY    +    L     + H    R S  RKP   D+N+++
Sbjct: 903 FQLFTPEKIYRKLREFRRGLEGKSNHDHSKDRRHSRARKPAYADRNQLK 951


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,560
Number of Sequences: 5004
Number of extensions: 18490
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 7
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)