GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000161-TA|BGIBMGA000161-PA|undefined
         (108 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1172 - 24521582-24521714,24522028-24522200,24522459-245226...    32   0.11 
10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164...    30   0.44 
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70...    28   1.8  
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196           26   7.2  
11_01_0424 - 3259192-3259377,3259497-3259727                           25   9.6  
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    25   9.6  
10_01_0133 + 1621574-1625779                                           25   9.6  

>07_03_1172 -
           24521582-24521714,24522028-24522200,24522459-24522677,
           24523878-24524114,24524332-24524469
          Length = 299

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 2   SFEEYHTVMEHHGKDFIPETEVVGKGVWRVAIIQRKIIDRCLNLAYDI 49
           S + YHT+  H G        VVG+GV RV +   K++D      Y++
Sbjct: 236 SIQPYHTLSMHPGDRVAAHRPVVGEGV-RVKVDTNKLVDLGFKYKYEV 282


>10_08_0173 +
           15414628-15414890,15415001-15415074,15416322-15416401,
           15417186-15417231,15417334-15417368,15417751-15417771,
           15418418-15419133,15419292-15419324,15419517-15419813,
           15420213-15420659,15420738-15420886,15421408-15421697,
           15421774-15421898,15422006-15422156
          Length = 908

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 49  IFKIKRIYTSSEQQHSDLRSIEQYHPLGGRSSLCRKPQRGDQNEMRESFPMTPKGTYAL 107
           ++ ++  Y   E    DL  I   H L    S+ R+   GDQ+E  +S     +  Y+L
Sbjct: 595 LWMLRNGYEVPEYMQKDLEDINNVHELYTVGSMSREESFGDQSENADSVHQNVREPYSL 653


>08_01_0098 -
           700443-700660,701112-701268,701586-701678,701763-702149,
           702755-702829,703486-703609,703693-703832,703904-703993,
           704254-704298,704917-705042,705138-705272,705966-706451,
           706539-706596,706728-706855,707209-707463
          Length = 838

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 46  AYDIFKIKRIYTSSEQQHSDLRSIEQYHPLGGRSSLCRKPQRGDQNEMRESFPMTPK 102
           A D  +I+ +  + ++Q  D  S  QY     +S    K  R  + EM + FP+TPK
Sbjct: 60  AADELRIQALEQALQEQPLDYESHVQYIQCLRKSGKIEK-LRAAREEMNKYFPLTPK 115


>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
          Length = 676

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 35  QRKIIDRCLNLAYDIFKIKRIYTSSEQQHSDLRSIEQYHPLGGRSSLCRKP 85
           Q +II  C+ L Y I   +   T  +    D    E Y PLGG SS   +P
Sbjct: 604 QSRIIHACIALHYFIRDSQMADTEFDNCDHD----ENYDPLGGTSSPSSEP 650


>11_01_0424 - 3259192-3259377,3259497-3259727
          Length = 138

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 1  MSFEEYHTVMEHHGKDFIPETEV--VGKGVWRVAIIQRKII 39
          M+ E++H  + HH KD  P T V   G+GV+    +  +++
Sbjct: 1  MAEEKHHHHLFHHKKDDEPATGVDSYGEGVYTSETVTTEVV 41


>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 40   DRCLNLAYDIFKIKRIYTSSEQQHSDLRS 68
            +R L    DI ++K + T+ E+Q  DLRS
Sbjct: 1421 ERVLKYQDDILQLKVLLTNLEEQVDDLRS 1449


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 43  LNLAYDIFKIKRIY--TSSEQQHSDLRSIEQYHPLGGRSSLCRKPQRGD 89
           L L  ++ ++K ++  T  EQ   +  SIE   P      LC K  +G+
Sbjct: 816 LTLKRNLVRLKLVWDETGREQTEEEANSIEGLQPPANLRELCIKNHKGN 864


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,742
Number of Sequences: 37544
Number of extensions: 117988
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 7
length of query: 108
length of database: 14,793,348
effective HSP length: 72
effective length of query: 36
effective length of database: 12,090,180
effective search space: 435246480
effective search space used: 435246480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)