GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000161-TA|BGIBMGA000161-PA|undefined
         (108 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.61 
SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_11066| Best HMM Match : PA14 (HMM E-Value=7.8)                      26   5.7  
SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)                       26   5.7  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.7  
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.7  
SB_59642| Best HMM Match : DUF822 (HMM E-Value=5)                      25   9.9  
SB_33622| Best HMM Match : DUF427 (HMM E-Value=0.98)                   25   9.9  
SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)                 25   9.9  

>SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 38  IIDRCLNLAYDIFKIKRIYTSSEQQHSDLRSIEQYHPLGGRSSLCRKPQRGDQNEMRE 95
           I D  ++  Y  F +++IY   EQQH+  +   Q H    +  L  + Q+  Q+  R+
Sbjct: 217 IADTKVDRRYGEFFMRQIYKFDEQQHNKRQQQRQQHNRRQQQQLHNQQQQRQQHNRRQ 274


>SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 2   SFEEYHTVMEHHGKDFIPETEVVGKGVWRVAIIQRKIIDRCLNLAYD 48
           SF ++HT++ H+ KD+    +     V +   + R II   LNLA D
Sbjct: 146 SFSQFHTIIIHYKKDYEKSYKKFLGLVKKQEQLLRVIIYLLLNLAED 192


>SB_11066| Best HMM Match : PA14 (HMM E-Value=7.8)
          Length = 257

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 20  ETEVVGKGVWRVAIIQRKIIDR--CLNLAYDIFKIKRIYTSSEQQHSDLRSIEQYHPLGG 77
           ET+ +      + II  K +D     +L Y + +I R Y S    + D  SI +      
Sbjct: 115 ETKQISVNPGDIIIIDSKDVDNDDSEDLGY-MSEIVRYYNSRNNGNDDGISIRKQSLTCE 173

Query: 78  RSSLCRKPQ-RGDQNEMRESFPMTPKGTYALP 108
             S+   P   GD+ E  E+  MT  G  A+P
Sbjct: 174 TPSVLSIPNSEGDKREEYETLRMTSVGNGAIP 205


>SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)
          Length = 249

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 13  HGKDFIPETEVVGKGVWR--VAIIQRKIIDRCLNLAYDIFKIKR 54
           H +  IP+ E  G+GVW+  V+++Q +   + +   +  ++ KR
Sbjct: 115 HARLTIPDIEPAGRGVWKFNVSVLQNEDFRKSVRAFWPSWQQKR 158


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 58   SSEQQHSDLRSIEQYHPLGGRSSLCRKPQRGDQNEMRESFP 98
            +S Q+H  L   E     G   +LC+KP+     E+R   P
Sbjct: 2960 ASNQRHRGLDHREDLPKRGALRTLCKKPKHTFLKELRADTP 3000


>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 74  PLGGRSSLCRKPQRGDQNEMRESFPMTPKG 103
           P+     L R P R D N     FP TP G
Sbjct: 318 PISQGPQLARTPTRKDPNWQGPQFPRTPTG 347


>SB_59642| Best HMM Match : DUF822 (HMM E-Value=5)
          Length = 595

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 10/73 (13%)

Query: 35  QRKIIDRCLNL--AYDIFKIKRIYTSSEQQHSDLRSIEQYHPL-------GGRSSLCRKP 85
           Q  ++DR +N      I + +R+   + Q+ S+ R+   Y+P        GGR+SL    
Sbjct: 154 QSNLVDREMNALCTAKIVRSQRVEDIARQE-SEERTTRDYYPEVVSDGREGGRASLPAPE 212

Query: 86  QRGDQNEMRESFP 98
           ++   N++ +SFP
Sbjct: 213 EQVTSNDVIDSFP 225


>SB_33622| Best HMM Match : DUF427 (HMM E-Value=0.98)
          Length = 265

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 13 HGKDFIPETEVVGKGVWR--VAIIQRK 37
          H +  IP+ E  G+GVW+  V+++Q +
Sbjct: 55 HARLTIPDIEPAGRGVWKFNVSVLQNE 81


>SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)
          Length = 1347

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 35  QRKIIDRCLNLAYDIFKIKRIYTSSE--QQHSDLRSIEQYHPL-------GGRSSLCRKP 85
           Q  ++DR +N A    KI R     +  +Q S+ R+   Y+P        GGR+SL    
Sbjct: 869 QSNLVDREMN-ALCTAKIVRSQEVEDIARQESEERTTRDYYPEVVSDGREGGRASLPAPE 927

Query: 86  QRGDQNEMRESFP 98
           ++   N++ +SFP
Sbjct: 928 EQVTSNDVIDSFP 940


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,853,494
Number of Sequences: 59808
Number of extensions: 136278
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 9
length of query: 108
length of database: 16,821,457
effective HSP length: 72
effective length of query: 36
effective length of database: 12,515,281
effective search space: 450550116
effective search space used: 450550116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)