GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000161-TA|BGIBMGA000161-PA|undefined
         (108 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit...    26   4.7  
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit...    26   4.7  
At5g02390.1 68418.m00162 expressed protein ; expression supporte...    26   6.2  
At3g23110.1 68416.m02913 disease resistance family protein conta...    25   8.1  

>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 893

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 1   MSFEEYHTVMEHHGKDFIPETEVVGKGVWRVAIIQRKIIDRCLNLAYDIFKIKRIYTSSE 60
           + F+EY T ++    DF+ +     + + R AI   +  +RC+++  ++ KIK  Y   E
Sbjct: 356 LEFKEYATEVD---VDFVRKAV---RAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 409


>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 894

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 1   MSFEEYHTVMEHHGKDFIPETEVVGKGVWRVAIIQRKIIDRCLNLAYDIFKIKRIYTSSE 60
           + F+EY T ++    DF+ +     + + R AI   +  +RC+++  ++ KIK  Y   E
Sbjct: 356 LEFKEYATEVD---VDFVRKAV---RAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 409


>At5g02390.1 68418.m00162 expressed protein ; expression supported
           by MPSS
          Length = 835

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 62  QHSDLRSIEQYHPLGGRSSLCRKPQRGDQNEMRESFPMTPKG 103
           +H+  R I++  P   +  +CR+   G +NE+  + P +P G
Sbjct: 29  KHNHWRYIKKRLP--HKRPVCRRTAPGTKNEVNNTIPSSPDG 68


>At3g23110.1 68416.m02913 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 835

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 80  SLCRKPQRGDQNEMRESFPMTPKGTY 105
           SLCR  QR    E+++ FP+   G++
Sbjct: 35  SLCRSDQRDALLELKKEFPIHSNGSH 60


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,648
Number of Sequences: 28952
Number of extensions: 96555
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 4
length of query: 108
length of database: 12,070,560
effective HSP length: 71
effective length of query: 37
effective length of database: 10,014,968
effective search space: 370553816
effective search space used: 370553816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)