GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000160-TA|BGIBMGA000160-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013106|Immunoglobulin V-set
         (124 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   3.5  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   4.6  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    20   8.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   8.0  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 1   MNSIIVILSSFPVLATTAAFQQQYFRVVPRSL 32
           M +I+   S + VLA     +QQY +++ + L
Sbjct: 69  MGTIVNAFSCYTVLAPVLCKRQQYCQLMSKLL 100


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 87  LRIVNVTLEDDAEYQC 102
           LRI +V  ED   YQC
Sbjct: 375 LRIESVRKEDKGMYQC 390


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory
          receptor candidate 54 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/23 (26%), Positives = 16/23 (69%)

Query: 1  MNSIIVILSSFPVLATTAAFQQQ 23
          +NSI +++S+  ++ ++  F Q+
Sbjct: 22 VNSIFLVMSAVTIILSSLIFNQE 44


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 97  DAEYQCQVGPAQMHKV 112
           D EY CQ G A   KV
Sbjct: 141 DWEYPCQRGGADEDKV 156


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 85  YNLRIVNVTLEDDAEYQCQV 104
           YNL I   T  D+  Y C +
Sbjct: 93  YNLLIHERTHTDERPYSCDI 112


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,937
Number of Sequences: 317
Number of extensions: 1051
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 124
length of database: 114,650
effective HSP length: 50
effective length of query: 74
effective length of database: 98,800
effective search space:  7311200
effective search space used:  7311200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)