GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000160-TA|BGIBMGA000160-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013106|Immunoglobulin V-set
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.1  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   2.0  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   2.6  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    25   3.5  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   3.5  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   4.6  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   4.6  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   4.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   4.6  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 80  RRNGVYNLRIVNVTLEDDAEYQCQ----VGPAQMHKVIRANASITVICK 124
           +RN +  L  +N TL DD    CQ    VG  +     R N ++ ++C+
Sbjct: 289 KRNQLRQLATLNGTLRDDENQVCQNCGNVGHRRFDCPERINHTMNIVCR 337


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 55  WAKDGFALGFSSVIPGYPRYTMFGDRRNGVYNLRIVNVTLEDDAEYQCQVGPAQMHKVIR 114
           + +D  A+GF+    G       GD   GVY    V     D+ EY C    A +  ++R
Sbjct: 272 YGQDQIAVGFT----GTSFKVCAGDLNKGVY----VRFNKRDNEEYLCTHPSASVGGILR 323

Query: 115 ANASITVI 122
            N  I ++
Sbjct: 324 GNLHINLL 331


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MNSIIVILSSFPVLATTAAFQQQYFRVVPRSLRVQEG---SEAVLE 43
           + +I +  + FP   T   F  +Y+ +VP ++R  E    S+A+LE
Sbjct: 691 LETIKISCAGFPSRWTFDEFVSRYYMLVPSAVRTTESLTFSKAILE 736


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 20  FQQQYFRVVPRSLRVQEGSEAVLECAVANLAGQVQW 55
           F +Q   VVP +LRV     +   C +  L+ +V W
Sbjct: 113 FDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGW 148


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 46  VANLAGQVQWAKDGFALGF--SSVIPGYPRYTMFGDRRNGV 84
           VAN     Q   DG A  F  SS  PG P YT +   R  +
Sbjct: 252 VANEVETEQIVFDGSASSFPISSTTPGIPCYTSYVQHRGSI 292


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 20  FQQQYFRVVPRSLRVQEGSEAVLECAVANLAGQVQW 55
           F +Q   VVP +LRV         C V  L+ +V W
Sbjct: 113 FDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGW 148


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 78  GDRRNGVYNLRIVNVT-LEDDAE-YQCQV 104
           GD R G YN  + NVT + +D + Y CQ+
Sbjct: 52  GDIRIGAYNYLVNNVTEINNDTDAYLCQL 80


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 20  FQQQYFRVVPRSLRVQEGSEAVLECAVANLAGQVQW 55
           F +Q   VVP +LRV         C V  L+ +V W
Sbjct: 113 FDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGW 148


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 57  KDGFALGFSSVIPGYPRYTMFGDRRNG 83
           K G +LG S VIP      M GD  NG
Sbjct: 485 KTGGSLGMSRVIPKLLLQVMSGDMLNG 511


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,757
Number of Sequences: 5004
Number of extensions: 18041
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 9
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)