GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000160-TA|BGIBMGA000160-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013106|Immunoglobulin V-set
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0085 - 20638769-20639150,20640054-20640286                       28   2.5  
10_08_0427 + 17828007-17828570,17829788-17829904,17830319-178303...    27   3.3  
07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450...    27   3.3  
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602...    27   3.3  
12_02_1043 - 25646075-25646437,25646655-25647959,25648394-25648648     26   7.5  
04_04_0286 - 24151135-24151392,24152261-24152330,24153468-24154096     26   10.0 
01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516     26   10.0 

>03_05_0085 - 20638769-20639150,20640054-20640286
          Length = 204

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 14 LATTAAFQQQYFRVVPRSLRVQEGSEAVLECAVANLAGQVQWAKDGFALGFS 65
          +A TA+  + Y R   R  R+QE  E + +  + +LA +   +  GFA G S
Sbjct: 1  MAATASAAEGYER--EREARIQENMERMQKLGIRDLANRFNQSATGFAGGGS 50


>10_08_0427 +
           17828007-17828570,17829788-17829904,17830319-17830384,
           17831466-17831572,17831939-17832017,17832861-17833574,
           17834040-17834148,17834263-17834429,17834876-17834950,
           17835025-17835117,17835202-17835294
          Length = 727

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 69  PGYPRYTMFGDRRNGVYNLRIVNVTLEDDAEYQ 101
           PG+P + ++    NG YNL+ V++  +D    Q
Sbjct: 292 PGFPIFEIYFAEANGGYNLQAVHLKPDDSDSQQ 324


>07_03_1217 -
           24943466-24943828,24944207-24944374,24944941-24945009,
           24945091-24945197,24945846-24945980,24946090-24946195,
           24946758-24946794,24949795-24949832
          Length = 340

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 64  FSSVIPGYPRYTMFGDRRNGVYNLRIVNVTLEDDAEYQCQVGPAQMHKVIR 114
           +  V+ GY  + +   ++NG  N R V + +E  AE    V   Q H ++R
Sbjct: 152 YGGVLTGYSSHAIVHPQQNGTANSR-VPLPVEPAAEEPIFVNAKQYHAILR 201


>06_02_0051 -
           10957857-10958127,10959791-10960035,10960160-10960229,
           10960319-10960986
          Length = 417

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 40  AVLECAVANLAGQVQWAKDGFALGFSSV----IPGYPRYTMFGDRRNGV 84
           AV E   A L G V+  + G  +   S     IP +P YTM+   +  V
Sbjct: 177 AVTEVTAAVLPGMVERGRGGAVVNLGSAASEAIPSFPLYTMYASTKRYV 225


>12_02_1043 - 25646075-25646437,25646655-25647959,25648394-25648648
          Length = 640

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 13  VLATTAAFQQQYFRVVPRSLRVQEGSEAVLECAVANLAGQVQWAKDG 59
           +L+ T +  + + R  P    V EG E V   AVA       W  DG
Sbjct: 498 LLSKTPSLTRLHIRTSPYCFSVFEGQEEVEAVAVAARGSWHMWMTDG 544


>04_04_0286 - 24151135-24151392,24152261-24152330,24153468-24154096
          Length = 318

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 23  QYFRVVPRSLR---VQEGSEAVLECAVANLAGQVQWAKDGFA---LGFSSVIPGYPRYTM 76
           +YF  V   L    ++   EA+     A L G V+  +        G SS++P YP Y++
Sbjct: 145 RYFHEVDEELMRNLIRLNVEALTRVTHAVLPGMVERKRGAIVNIGSGASSILPSYPLYSV 204

Query: 77  FGDRRNGVYNL-RIVNVTLEDDA-EYQCQV 104
           +   +  V    R + V  ++   + QCQV
Sbjct: 205 YAATKAYVDQFSRCLYVEYKNKGIDVQCQV 234


>01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516
          Length = 297

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 71  YPRYTMFGDRRNGVYNLRIVNVTLEDDAEYQCQVGPAQMHKVIR 114
           YP+Y  FG + N  +NL +  +    ++      G   +H+ +R
Sbjct: 204 YPQYAYFGMQPNEYFNLVLGAINTLSESIQHLSTGHEALHEDVR 247


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,837
Number of Sequences: 37544
Number of extensions: 124609
Number of successful extensions: 264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)