GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000160-TA|BGIBMGA000160-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013106|Immunoglobulin V-set
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    38   3e-05
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    38   3e-05
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.33 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   3.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 37.9 bits (84), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 34  VQEGSEAVLECAVA-NLAGQVQWAKDGFALGFSSVIPGYPRYTMFGDRRNGVYNLRIVNV 92
           +Q G    L+C+ A N   QV WA DGFAL  +         T+ GD    + ++ I +V
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGD---VISHVNISHV 489

Query: 93  TLEDDAEYQC 102
            +ED  EY C
Sbjct: 490 MVEDGGEYSC 499



 Score = 24.2 bits (50), Expect = 0.44
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 24  YFRVVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDG 59
           YF    R + V++G  A L C V  +    V W K G
Sbjct: 809 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGG 845



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 87  LRIVNVTLEDDAEYQC 102
           L +  VTLED+  Y+C
Sbjct: 295 LALEAVTLEDNGIYRC 310


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 37.9 bits (84), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 34  VQEGSEAVLECAVA-NLAGQVQWAKDGFALGFSSVIPGYPRYTMFGDRRNGVYNLRIVNV 92
           +Q G    L+C+ A N   QV WA DGFAL  +         T+ GD    + ++ I +V
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGD---VISHVNISHV 489

Query: 93  TLEDDAEYQC 102
            +ED  EY C
Sbjct: 490 MVEDGGEYSC 499



 Score = 24.2 bits (50), Expect = 0.44
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 24  YFRVVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDG 59
           YF    R + V++G  A L C V  +    V W K G
Sbjct: 805 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGG 841



 Score = 23.8 bits (49), Expect = 0.58
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 37  GSEAVLECAVA--NLAGQVQWAKDGFALG 63
           G    L C+V   +L   + W KDG A+G
Sbjct: 625 GERTTLTCSVTRGDLPLSISWLKDGRAMG 653



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 87  LRIVNVTLEDDAEYQC 102
           L +  VTLED+  Y+C
Sbjct: 295 LALEAVTLEDNGIYRC 310


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.33
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 27  VVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDGFALGFSSVI 68
           + P +  +  G  A   C V  N    V W KDG  LG    +
Sbjct: 312 IEPSTQTIDFGRPATFTCNVRGNPIKTVSWLKDGKPLGLEEAV 354


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 33  RVQEGSEAVLECAVAN 48
           R  +GS+ +L+CA +N
Sbjct: 760 RSPQGSQGLLQCATSN 775


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 72  PRYTMFGDRRN 82
           PRY +FGD  N
Sbjct: 536 PRYCLFGDSVN 546


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 72  PRYTMFGDRRNGVYNL 87
           PRY  + +R  GV+ L
Sbjct: 475 PRYIKWTNRERGVFKL 490


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,998
Number of Sequences: 429
Number of extensions: 1023
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)