GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000160-TA|BGIBMGA000160-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013106|Immunoglobulin V-set
         (124 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67730.1 68414.m07729 b-keto acyl reductase, putative (GLOSSY...    29   1.2  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    26   6.4  
At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family pr...    26   8.4  

>At1g67730.1 68414.m07729 b-keto acyl reductase, putative (GLOSSY8)
           similar to b-keto acyl reductase GI:2586127 from
           [Hordeum vulgare]
          Length = 318

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 36  EGSEAVLECAVANLAGQVQWAKDGFALGFSSVIPGYPRYTMFGDRRNGVYNL-RIVNVTL 94
           EG+  V +  + N+  + + A      G +++IP YP Y+++   +  V    + ++V  
Sbjct: 165 EGTTKVTQAVLPNMLKRKKGAIINMGSGAAALIPSYPFYSVYAGAKTYVDQFTKCLHVEY 224

Query: 95  EDDA-EYQCQVG---PAQMHKVIRAN 116
           +    + QCQV      +M K+ RA+
Sbjct: 225 KKSGIDVQCQVPLYVATKMTKIRRAS 250


>At1g02730.1 68414.m00226 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-4 [gi:9622880]
           from Zea mays
          Length = 1181

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 51  GQVQWAKDGFALGFSSVIPGYPRYTMFGDR 80
           G   W KDG+ +G      GY     FG+R
Sbjct: 269 GNAVWPKDGYGIGSGGGGNGYETPPEFGER 298


>At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family
           protein similar to CoA-thioester hydrolase CHY1
           (beta-hydroxyisobutyryl-CoA hydrolase) [Arabidopsis
           thaliana] GI:8572760; contains Pfam profile PF00378:
           enoyl-CoA hydratase/isomerase family protein
          Length = 381

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 38  SEAVLECAVANLAGQVQWAKDGFALGFSSVIPGYPRYTMFGDR 80
           +E  L CA+A          DG  +GF   + G+ RY +  +R
Sbjct: 95  AEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVITER 137


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,978
Number of Sequences: 28952
Number of extensions: 97704
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 12,070,560
effective HSP length: 73
effective length of query: 51
effective length of database: 9,957,064
effective search space: 507810264
effective search space used: 507810264
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)