Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
         (339 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        26   0.34 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   7.4  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 179 ISRYASINDIIRRALVSAGVPAILEPNGLVRSDGKRSDGMSIIPWKMGRSLVWDATCVDT 238
           ++RY     I R  ++    P +  P    R +  + +  SI  W++   LV +  C  +
Sbjct: 91  LNRYQETGSI-RPGVIGGSKPRVATPEVENRIEQYKRENPSIFSWEIRDRLVKEGICDRS 149

Query: 239 MAPT 242
            AP+
Sbjct: 150 TAPS 153


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 302 LRPRETRRPVHILHKELALLSSVEM 326
           + P+E  R V I+HK+    SS++M
Sbjct: 189 ITPKEIERMVQIIHKK---FSSIQM 210


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,199
Number of Sequences: 317
Number of extensions: 3105
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 339
length of database: 114,650
effective HSP length: 57
effective length of query: 282
effective length of database: 96,581
effective search space: 27235842
effective search space used: 27235842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)