Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   3.8  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   6.7  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 22  KISCVALPAFLGSVHSTYELVSKILYLPLLDPKITYMTEARNEWLLTCPNTD 73
           ++S   LP  LG + S Y L   I Y P + PK++ M E   + LL   N D
Sbjct: 247 ELSNAQLP-LLG-LFSDYHLSYDIDYQPEVQPKLSEMVETALDVLLNATNED 296


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 163 DRFG-YHGLSCVKSAGRISRYASINDIIRRALVSAGVPAILEPNGLVRSDGKRSDGMSII 221
           DR+G +     V    R+S Y S+ND   + L+      + + + +V S GK +  + +I
Sbjct: 710 DRYGVWKSRYFVLKGTRLSYYHSLNDASEKGLIDMTSHRVTKTDDIVLSGGKTA--IKLI 767

Query: 222 P 222
           P
Sbjct: 768 P 768


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,384
Number of Sequences: 5004
Number of extensions: 61884
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 2
length of query: 339
length of database: 2,362,478
effective HSP length: 73
effective length of query: 266
effective length of database: 1,997,186
effective search space: 531251476
effective search space used: 531251476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)