Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
         (339 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058347-1|AAL13576.1|  458|Drosophila melanogaster GH12067p pro...    32   0.99 
AE014134-1116|AAF52405.1|  458|Drosophila melanogaster CG31911-P...    32   0.99 
AE014298-1095|AAF46302.2| 1470|Drosophila melanogaster CG1531-PB...    30   4.0  
AY094896-1|AAM11249.1|  478|Drosophila melanogaster RE70727p pro...    29   9.2  
AE014297-204|AAF52052.2|  478|Drosophila melanogaster CG31543-PC...    29   9.2  

>AY058347-1|AAL13576.1|  458|Drosophila melanogaster GH12067p
           protein.
          Length = 458

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 260 GLKRRKYENLSKDFIFVPFGVETLSPWGP--SAKSFFKDLK 298
           GL   K + L   FIF+  GV TL PW    +AKS+F+D K
Sbjct: 47  GLPAPKDKFLIVFFIFLLHGVGTLMPWNMFITAKSYFEDFK 87


>AE014134-1116|AAF52405.1|  458|Drosophila melanogaster CG31911-PA
           protein.
          Length = 458

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 260 GLKRRKYENLSKDFIFVPFGVETLSPWGP--SAKSFFKDLK 298
           GL   K + L   FIF+  GV TL PW    +AKS+F+D K
Sbjct: 47  GLPAPKDKFLIVFFIFLLHGVGTLMPWNMFITAKSYFEDFK 87


>AE014298-1095|AAF46302.2| 1470|Drosophila melanogaster CG1531-PB
            protein.
          Length = 1470

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 40   ELVSKILYLPLLDPKITYMTEARNEWLLTCPNTD--LPTVPTSQRLWDEPLCELIRKNLL 97
            E V  + YL L+   + +     ++ L   P T+  LP     Q +   P  + +R+ +L
Sbjct: 1258 EFVRLVYYLELVTDSMDWDCFNASKGLCFIPGTETTLPQFWCQQLMEVRPPADTVRELVL 1317

Query: 98   DSCRDSTERARLLAVAEWESGLWLQAH--PSLHTGTLMSDNSFRLATCLRLGAPCCVQHH 155
             +     ++ RLL +      L+   H  P L+   +  ++S     CL  G   C++ +
Sbjct: 1318 INQHSLWQQPRLLELPREYERLFTYYHERPCLNCYKVPKESSI----CLLCGTIVCLKQN 1373

Query: 156  CQCGNIVDRFGYHGLSC 172
            C   N       H LSC
Sbjct: 1374 CCAENDCCEAVRHTLSC 1390


>AY094896-1|AAM11249.1|  478|Drosophila melanogaster RE70727p
           protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 69  CPNTDLPTVPTSQRLWDEPLCELIRKNLLDSCRDSTERARLLAVAEWESGLWLQAHPSLH 128
           C    + T     + W   +  L+  NLL     S E+A   A AE E+G   Q H   H
Sbjct: 110 CSTAQMMTPAHQAQSWPAEVDNLL--NLLGQ-PGSQEKA---AAAETETGQRQQQHQHHH 163

Query: 129 -TGTLMSDNSFRLATCLRLGAPCCVQHHCQCGNIVDRFGYHGLSCVKS-AGRISRYASIN 186
             G   S     LA    +G+    ++   C NI+     +GLS V    G  +    +N
Sbjct: 164 HNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISDMNQYGLSVVDDFLGMETGLKILN 223

Query: 187 DIIRRALVSAG 197
           ++  R++ +AG
Sbjct: 224 EV--RSMYNAG 232


>AE014297-204|AAF52052.2|  478|Drosophila melanogaster CG31543-PC,
           isoform C protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 69  CPNTDLPTVPTSQRLWDEPLCELIRKNLLDSCRDSTERARLLAVAEWESGLWLQAHPSLH 128
           C    + T     + W   +  L+  NLL     S E+A   A AE E+G   Q H   H
Sbjct: 110 CSTAQMMTPAHQAQSWPAEVDNLL--NLLGQ-PGSQEKA---AAAETETGQRQQQHQHHH 163

Query: 129 -TGTLMSDNSFRLATCLRLGAPCCVQHHCQCGNIVDRFGYHGLSCVKS-AGRISRYASIN 186
             G   S     LA    +G+    ++   C NI+     +GLS V    G  +    +N
Sbjct: 164 HNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISDMNQYGLSVVDDFLGMETGLKILN 223

Query: 187 DIIRRALVSAG 197
           ++  R++ +AG
Sbjct: 224 EV--RSMYNAG 232


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,551
Number of Sequences: 52641
Number of extensions: 661808
Number of successful extensions: 1110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 5
length of query: 339
length of database: 24,830,863
effective HSP length: 85
effective length of query: 254
effective length of database: 20,356,378
effective search space: 5170520012
effective search space used: 5170520012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)